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PDBsum entry 2qsg

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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 2qsg calculated with MOLE 2.0 PDB id
2qsg
Pores calculated on whole structure Pores calculated excluding ligands

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8 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.99 2.99 29.7 -2.42 -0.80 16.8 82 2 1 2 1 0 0 0  DT 2 W DG 3 W DC 5 W DT 6 W DT 15 Y DG 16 Y DT 17
Y DT 18 Y DG 19 Y DA 20 Y DG 21 Y DT 22 Y
2 1.86 2.28 33.5 -0.41 -0.40 10.8 87 2 2 2 4 0 0 0  DT 1 W DT 2 W
3 1.62 1.75 34.3 -1.92 -0.58 14.9 80 2 0 2 3 0 0 0  DT 2 W DG 3 W DC 5 W DT 6 W DT 18 Y DG 19 Y DA 20
Y DG 21 Y DT 22 Y
4 1.82 2.10 48.9 -2.21 -0.51 25.9 79 8 2 2 2 1 0 0  DT 2 W DG 3 W DT 12 W DT 17 Y DT 18 Y DG 19 Y DA
20 Y DG 21 Y DT 22 Y
5 2.23 2.34 50.0 -1.71 -0.56 21.7 80 4 4 2 1 1 0 0  DT 6 W DC 13 W DG 16 Y DT 17 Y
6 1.44 1.50 51.2 -2.14 -0.67 20.7 81 9 0 2 1 0 0 0  DT 2 W DG 3 W DC 10 W DA 11 W DT 12 W DG 16 Y DT
17 Y DT 18 Y DG 19 Y DA 20 Y DG 21 Y DT 22 Y
7 1.45 1.45 54.2 -2.01 -0.73 21.0 82 7 2 2 1 0 0 0  DT 6 W DC 10 W DA 11 W DT 12 W DC 13 W DG 16 Y DT
17 Y DT 18 Y
8 1.21 2.83 65.4 -2.03 -0.49 25.6 78 7 3 0 2 1 1 0  DC 10 W DA 11 W DT 12 W DG 16 Y DT 17 Y DT 18 Y

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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