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PDBsum entry 2qsg

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Top Page protein dna_rna Protein-protein interface(s) tunnels links
Tunnel analysis for: 2qsg calculated with MOLE 2.0 PDB id
2qsg
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.26 1.34 25.7 -1.69 -0.19 20.1 83 2 2 2 4 1 1 0  
2 1.25 1.51 32.2 -1.17 -0.09 13.6 78 3 0 1 4 2 1 0  
3 1.29 1.34 43.1 -1.46 -0.21 24.2 82 6 4 1 7 1 1 0  
4 1.10 1.10 16.7 -0.79 0.24 8.4 73 2 1 1 3 2 2 0  
5 2.31 2.31 17.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  DA 21 W DC 22 W DG 4 Y DT 5 Y DA 6 Y DG 7 Y DC 8 Y

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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