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Ligand clusters for UniProt code P04746

Ligand clusters for P04746: Pancreatic alpha-amylase OS=Homo sapiens GN=AMY2A PE=1 SV=2

Top 6 (of 14) ligand clusters
Cluster 1.
25 ligand types
31 ligands
Cluster 2.
5 ligand types
6 ligands
Cluster 3.
2 ligand types
4 ligands
Cluster 4.
3 ligand types
4 ligands
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
2 ligands
Representative protein: 1bsiA  
 

Structures

PDB   Schematic diagram
1bsiA    
2qmkA    
3ij9A    
3ij8A    
3ij7A    
 more ...

 

 Cluster 1 contains 25 ligand types (of which only 20 are listed. Click for all)

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Ligand Description


 
1. Ligand: LAG × 1
Maltosyl-Alpha (1,4)-(Z,3s,4s,5r,6r)-3,4,5-Trihydroxy- 6-Hydroxymethyl-Piperidin-2-One oxime
PDB code: 1u30(A).


 
2. Ligand: 3SA × 1
Acarbose derived trisaccharide
PDB code: 1xcw(A).


 
3. Ligand: LM2 × 1
4'-O-Methyl-Maltosyl-Alpha (1,4)-(Z, 3s,4s,5r,6r)-3,4, 5-Trihydroxy-6-Hydroxymethyl-Piperidin-2-One
PDB code: 1u33(A).


 
4. Ligand: IAB × 1
Iso-Acarbose
PDB code: 1xcx(A).


 
5. Ligand: HMC × 1
5-Hydroxymethyl-Chonduritol
PDB code: 1cpu(A).


 
6. Ligand: ARE × 2
Acarbose derived pentasaccharide
PDB codes: 1xd0(A), 1xh2(A).


 
7. Ligand: GOX × 2
(2s,3s,4r,5r)-6-(Hydroxyamino)-2-(Hydroxymethyl)-2,3,4, 5-Tetrahydropyridine-3,4,5-Triol
PDB codes: 1u2y(A), 1u30(A).


 
8. Ligand: 6SA × 1
Acarbose derived hexasaccharide
PDB code: 1xd1(A).


 
9. Ligand: AAO × 1
Acarbose derived hexasaccharide
PDB code: 1xh0(A).


 
10. Ligand: ARE × 2
Acarbose derived pentasaccharide
PDB codes: 3baj(A), 3bay(A).


 
11. Ligand: GLC-GLC × 2
GLC=Alpha-D-Glucose.
PDB codes: 1cpu(A), 3cpu(A).


 
12. Ligand: MPD × 2
(4s)-2-Methyl-2,4-Pentanediol
PDB codes: 3old(A), 3ole(A).

_Na
 
13. Metal: _NA × 2
PDB codes: 3baw(A), 3bax(A).


 
14. Ligand: ACI-G6D-GLC-ACI-G6D-GLC-GLC × 1
ACI=6-Amino-4-Hydroxymethyl-Cyclohex-4-Ene-1,2,3-Triol, G6D=6-Deoxy-Alpha-D-Glucose, GLC=Alpha-D-Glucose.
PDB code: 3ole(A).


 
15. Ligand: B0D × 1
(2r,3s,4r,5r,6r)-2,6-Difluoro-2-(Hydroxymethyl) tetrahydro-2h-Pyran-3,4,5-Triol
PDB code: 3ij8(A).


 
16. Ligand: B9D × 1
Beta-L-Sorbopyranosyl fluoride
PDB code: 3ij8(A).


 
17. Ligand: B9D-BGC × 1
B9D=Beta-L-Sorbopyranosyl fluoride, BGC=Beta-D-Glucose.
PDB code: 3ij9(A).


 
18. Ligand: B9D-BGC-B8D × 1
B9D=Beta-L-Sorbopyranosyl fluoride, BGC=Beta-D-Glucose, B8D=4-O-Methyl-Alpha-D-Glucopyranose.
PDB code: 3ij7(A).


 
19. Ligand: GLC-AGL × 1
GLC=Alpha-D-Glucose, AGL=4,6-Dideoxy-4-Amino-Alpha-D-Glucose.
PDB code: 1cpu(A).


 
20. Ligand: GLC-G6D-AC1-BGC × 1
GLC=Alpha-D-Glucose, G6D=6-Deoxy-Alpha-D-Glucose, AC1=6-Methyl-5-(4,5,6-Trihydroxy-3-Hydroxymethyl-Cyclohex- 2-Enylamino)-Tetrahydro-Pyran-2,3,4-Triol, BGC=Beta-D-Glucose.
PDB code: 1b2y(A).

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 Cluster 2 contains 5 ligand types

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Ligand Description


 
1. Ligand: GLC-GLC-BGC × 2
GLC=Alpha-D-Glucose, BGC=Beta-D-Glucose.
PDB codes: 3old(A), 3ole(A).


 
2. Ligand: BGC × 1
Beta-D-Glucose
PDB code: 3oli(A).


 
3. Ligand: GLC × 1
Alpha-D-Glucose
PDB code: 3olg(A).


 
4. Ligand: GLF-B8D × 1
B8D=4-O-Methyl-Alpha-D-Glucopyranose, GLF=1-Fluoro-Alpha-1-Deoxy-D-Glucose.
PDB code: 3ij7(A).


 
5. Ligand: MPD × 1
(4s)-2-Methyl-2,4-Pentanediol
PDB code: 3oli(A).

 

 Cluster 3 contains 2 ligand types

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Ligand Description


 
1. Ligand: GLC-GLC-GLC × 3
GLC=Alpha-D-Glucose.
PDB codes: 3old(A), 3ole(A), 3oli(A).


 
2. Ligand: GLC-GLC-GLC-BGC × 1
GLC=Alpha-D-Glucose, BGC=Beta-D-Glucose.
PDB code: 3olg(A).

 

 Cluster 4 contains 3 ligand types

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Ligand Description


 
1. Ligand: B0D × 2
(2r,3s,4r,5r,6r)-2,6-Difluoro-2-(Hydroxymethyl) tetrahydro-2h-Pyran-3,4,5-Triol
PDB codes: 3ij8(A), 3ij9(A).


 
2. Ligand: GLC-GLC × 1
GLC=Alpha-D-Glucose.
PDB code: 3oli(A).


 
3. Ligand: GLC-GLC-BGC × 1
GLC=Alpha-D-Glucose, BGC=Beta-D-Glucose.
PDB code: 3olg(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: 0XR × 1
Ethyl (2e)-3-(3,4-Dihydroxyphenyl)prop-2-Enoate
PDB code: 4gqq(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: 0XR × 2
Ethyl (2e)-3-(3,4-Dihydroxyphenyl)prop-2-Enoate
PDB codes: 4gqq(A),

 

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