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PDBsum entry 2ql2

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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 2ql2 calculated with MOLE 2.0 PDB id
2ql2
Pores calculated on whole structure Pores calculated excluding ligands

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6 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.24 1.52 62.7 -1.50 -0.23 25.1 82 6 2 2 5 0 0 0  DA 2 G DG 3 G DG 4 G DC 5 G DC 6 G DA 7 G DT 8 G
DG 11 G DT 13 G DG 21 H DG 22 H DA 23 H DC 24 H
DC 25 H DA 26 H DT 29 H DG 31 H DC 32 H
2 1.38 1.36 93.4 -1.23 -0.50 18.0 79 7 3 2 4 0 0 0  DG 4 E DC 5 E DC 6 E DA 7 E DT 8 E DT 13 E DA 20
F DG 21 F DG 22 F DA 23 F DC 24 F DC 25 F DA 26 F
DC 33 F DT 34 F DA 35 F
3 1.63 1.61 160.6 -0.92 -0.27 11.4 84 7 2 8 14 2 0 0  DT 13 E DA 20 F DG 21 F DG 22 F DA 23 F DC 24 F
DG 11 G DT 13 G DG 21 H DG 22 H DA 23 H DC 24 H
4 1.60 1.73 180.6 -1.05 -0.47 12.7 87 7 4 7 9 0 0 0  DT 13 E DA 20 F DG 21 F DG 22 F DA 23 F DC 24 F D
A 2 G DG 3 G DG 4 G DC 5 G DG 31 H DC 32 H DT 34
H DA 35 H
5 1.00 1.02 218.2 -1.05 -0.33 13.8 82 11 3 10 15 2 0 0  DG 4 E DC 5 E DC 6 E DA 7 E DT 8 E DA 23 F DC 24
F DC 25 F DA 26 F DC 33 F DT 34 F DA 35 F DG 11 G
DT 13 G DG 21 H DG 22 H DA 23 H DC 24 H
6 1.21 1.37 226.9 -1.02 -0.40 14.4 85 11 4 9 10 0 0 0  DG 4 E DC 5 E DC 6 E DA 7 E DT 8 E DA 23 F DC 24
F DC 25 F DA 26 F DC 33 F DT 34 F DA 35 F DA 2 G
DG 3 G DG 4 G DC 5 G DG 31 H DC 32 H DT 34 H DA
35 H

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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