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PDBsum entry 2qcu

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Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 2qcu calculated with MOLE 2.0 PDB id
2qcu
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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14 tunnels, coloured by tunnel radius 14 tunnels, coloured by tunnel radius 14 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.48 33.7 -0.07 -0.10 5.5 78 2 2 2 4 3 2 1  600 FAD B,806 EDO B
2 1.27 33.9 -1.53 -0.28 21.6 82 6 1 3 2 2 0 0  600 FAD A,804 PO4 A
3 1.47 38.2 -0.87 -0.34 9.3 80 3 2 3 3 2 2 0  600 FAD A,806 EDO A
4 1.47 42.1 -0.22 0.08 16.3 81 5 1 2 8 3 0 0  600 FAD A,801 BOG A,804 PO4 A
5 1.28 49.4 -1.04 -0.26 14.4 83 6 1 5 4 4 1 1  600 FAD B,803 PO4 B
6 1.40 57.3 0.01 0.11 11.7 81 5 1 4 11 6 1 1  600 FAD B,803 PO4 B,816 EDO B
7 1.67 4.6 -1.41 -0.31 18.1 81 3 0 0 1 0 1 0  
8 1.41 8.4 -0.97 0.22 24.5 80 3 1 0 1 0 2 0  
9 1.75 7.8 -1.53 -0.21 28.2 68 1 1 0 1 1 1 0  
10 1.69 8.2 -1.49 -0.12 27.1 66 1 1 0 1 1 2 0  
11 1.80 11.8 -0.84 0.11 24.8 65 1 1 0 2 1 1 0  
12 1.94 5.7 0.22 0.05 7.8 78 1 0 1 2 0 1 0  813 EDO B
13 2.23 8.2 -0.09 0.06 13.1 77 2 0 1 3 0 0 0  813 EDO B
14 1.46 8.6 -0.71 -0.62 9.1 75 1 0 1 2 1 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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