PDBsum entry 2q5d Go to PDB code:  Pore analysis for: 2q5d calculated with MOLE 2.0 PDB id 2q5d Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   14 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.59 1.74 26.9 -0.14 -0.02 12.1 82 2 2 2 5 2 0 0   2 1.14 1.15 28.9 -1.92 -0.35 24.0 78 3 5 2 2 2 0 0   3 1.43 2.33 68.3 -2.70 -0.46 33.9 77 5 8 3 1 3 0 0   4 1.30 1.59 101.1 0.70 0.19 6.8 76 3 4 5 17 7 0 0   5 1.56 2.21 135.8 -2.17 -0.55 25.6 82 10 8 6 3 4 0 0   6 1.30 1.97 155.6 -0.35 -0.04 15.9 81 4 12 8 17 4 2 1   7 1.66 1.78 203.7 -1.20 -0.35 19.5 83 13 15 12 16 4 0 0   8 1.16 2.60 215.1 -1.17 -0.37 18.6 83 16 15 11 15 4 0 0   9 2.20 3.42 217.8 -1.45 -0.30 17.8 82 9 9 13 10 7 1 0   10 1.76 2.07 229.3 -1.42 -0.38 16.6 82 12 10 12 9 7 1 0   11 1.31 1.92 230.0 -1.23 -0.31 21.1 81 10 22 10 18 4 3 1   12 1.29 2.07 249.8 -1.37 -0.36 17.5 83 10 14 15 15 4 3 1   13 1.24 1.70 303.6 -1.00 -0.12 19.4 79 15 19 25 27 12 2 1   14 1.30 1.34 360.0 -0.89 -0.21 18.2 81 18 24 26 33 9 2 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.