PDBsum entry 2pyd Go to PDB code:  Tunnel analysis for: 2pyd calculated with MOLE 2.0 PDB id 2pyd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.32 2.04 44.2 -1.32 -0.25 13.8 79 3 4 2 5 5 2 0  DMS 977 A 2 1.38 1.38 21.4 -3.39 -0.88 41.2 82 4 7 2 0 0 0 0   3 1.37 1.37 31.1 -2.22 -0.59 26.1 82 5 5 4 1 0 1 0   4 1.91 3.80 19.2 0.64 0.20 15.9 81 2 2 1 4 0 0 0   5 1.10 1.10 24.7 -0.94 0.07 23.6 70 2 3 0 2 4 0 0   6 1.31 1.42 15.9 -2.19 -0.79 20.4 93 2 1 3 0 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.