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PDBsum entry 2pxi
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Tunnel analysis for: 2pxi calculated with  MOLE 2.0
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PDB id
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2pxi
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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2 tunnels,
coloured by tunnel radius |
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13 tunnels,
coloured by
tunnel radius
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13 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.12 |
1.12 |
26.3 |
-1.07 |
-0.12 |
19.8 |
81 |
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4 |
1 |
1 |
1 |
2 |
0 |
0 |
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DC 8 P DG 9 P DOC 10 P DG 9 T DC 10 T DA 11 T DT
12 T
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2 |
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1.12 |
1.12 |
26.6 |
-1.37 |
-0.11 |
20.7 |
84 |
4 |
1 |
1 |
1 |
1 |
0 |
0 |
DC 8 P DG 9 P DOC 10 P DG 7 T DC 8 T DG 9 T DC 10
T DA 11 T DT 12 T
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3 |
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1.13 |
1.13 |
27.8 |
-1.48 |
-0.25 |
22.0 |
84 |
4 |
1 |
1 |
1 |
1 |
0 |
0 |
DC 8 P DG 9 P DOC 10 P DC 8 T DG 9 T DC 10 T DA
11 T DT 12 T
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4 |
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1.76 |
1.80 |
28.0 |
-1.18 |
0.27 |
22.4 |
76 |
5 |
2 |
0 |
2 |
3 |
0 |
0 |
GFH 338 A DG 9 P DOC 10 P DC 6 T DG 7 T DC 8 T
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5 |
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1.64 |
1.81 |
29.2 |
-1.66 |
0.26 |
23.5 |
78 |
5 |
3 |
0 |
2 |
2 |
0 |
0 |
GFH 338 A DG 9 P DOC 10 P DC 6 T DG 7 T DC 8 T
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6 |
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1.76 |
1.79 |
30.0 |
-2.13 |
-0.48 |
23.4 |
80 |
4 |
6 |
1 |
1 |
3 |
0 |
0 |
GFH 338 A NA 340 A DG 9 P DOC 10 P
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7 |
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1.50 |
1.50 |
30.4 |
-1.80 |
0.05 |
25.7 |
78 |
5 |
3 |
0 |
2 |
2 |
0 |
0 |
GFH 338 A DG 9 P DOC 10 P DC 6 T DG 7 T DC 8 T DG
9 T
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8 |
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1.64 |
1.81 |
32.1 |
-2.26 |
-0.47 |
23.3 |
80 |
4 |
7 |
1 |
1 |
3 |
0 |
0 |
GFH 338 A NA 340 A DG 9 P DOC 10 P DG 7 T DC 8 T
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9 |
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1.55 |
1.65 |
33.4 |
-2.32 |
-0.55 |
24.7 |
80 |
4 |
7 |
1 |
1 |
3 |
0 |
0 |
GFH 338 A NA 340 A DG 9 P DOC 10 P DC 8 T DG 9 T
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10 |
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1.75 |
1.79 |
36.8 |
-1.86 |
-0.44 |
24.0 |
85 |
4 |
5 |
2 |
3 |
3 |
0 |
0 |
GFH 338 A NA 340 A DG 9 P DOC 10 P
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11 |
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1.66 |
1.79 |
38.6 |
-1.47 |
0.04 |
17.4 |
79 |
4 |
3 |
2 |
2 |
2 |
1 |
0 |
GFH 338 A DG 7 P DC 8 P DG 9 P DOC 10 P DC 6 T DG
7 T DC 8 T
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12 |
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1.63 |
1.82 |
39.0 |
-1.90 |
-0.44 |
22.6 |
84 |
4 |
6 |
2 |
3 |
3 |
0 |
0 |
GFH 338 A NA 340 A DG 9 P DOC 10 P DG 7 T DC 8 T
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13 |
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1.54 |
1.64 |
40.2 |
-1.98 |
-0.49 |
24.0 |
84 |
4 |
6 |
2 |
3 |
3 |
0 |
0 |
GFH 338 A NA 340 A DG 9 P DOC 10 P DC 8 T DG 9 T
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program