PDBsum entry 2pvy

Pore analysis for: 2pvy calculated with

MOLE 2.0

PDB id

2pvy

Pores calculated on whole structure

Pores calculated excluding ligands

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10 pores, coloured by radius

13 pores, coloured by radius

13 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.76

3.55

25.2

-3.19

-0.70

40.1

85

7

6

1

0

0

0

0

ACP 802 C

2

1.17

1.34

25.6

0.69

0.31

10.7

68

2

1

0

4

3

1

0

SO4 801 C

3

1.75

1.95

25.7

-1.94

-0.28

25.1

62

3

1

0

0

2

1

0

4

1.92

2.19

38.1

-2.03

-0.43

29.0

84

6

6

2

4

1

0

0

5

1.92

2.19

39.0

-2.55

-0.52

35.2

87

5

6

2

2

0

0

0

ACP 802 A

6

1.66

1.66

43.3

-1.66

-0.46

23.0

85

6

6

2

5

1

0

0

7

1.67

1.67

44.2

-2.05

-0.54

26.3

87

6

6

2

3

0

0

0

ACP 802 A

8

1.92

2.19

48.7

-1.38

-0.38

23.4

87

5

6

3

2

0

0

0

ACP 802 D

9

2.50

3.78

56.6

-1.82

-0.62

22.7

80

4

7

5

7

2

0

0

ACP 8002 B

10

1.77

3.75

59.9

-2.26

-0.57

29.9

84

10

10

4

6

1

0

0

ACP 802 A

11

2.78

2.77

62.1

-2.42

-0.64

30.7

84

7

10

4

6

1

0

0

ACP 8002 B ACP 802 D

12

1.66

1.66

62.2

-1.78

-0.51

26.1

87

6

8

3

3

0

0

0

ACP 8002 B ACP 802 D

13

1.36

1.69

25.7

-1.52

-0.42

15.7

81

2

1

1

2

0

2

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.