PDBsum entry 2ptk

Pore analysis for: 2ptk calculated with

MOLE 2.0

PDB id

2ptk

Pores calculated on whole structure

Pores calculated excluding ligands

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13 pores, coloured by radius

13 pores, coloured by radius

13 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.47

2.84

27.7

-0.68

-0.25

17.0

73

2

2

2

3

2

1

1

2

2.23

2.23

28.3

-1.23

-0.34

16.3

76

3

4

2

2

1

1

0

3

2.67

2.67

35.6

-1.59

-0.45

21.5

83

5

5

5

3

1

1

0

4

1.25

1.41

37.5

-0.33

-0.22

14.0

79

3

3

1

6

1

0

0

5

2.19

2.19

42.6

-1.47

-0.39

19.6

80

4

5

3

3

1

1

0

6

2.66

2.66

49.8

-1.65

-0.48

22.4

84

6

6

6

4

1

1

0

7

1.25

1.41

53.5

-0.68

-0.39

12.7

81

5

5

3

7

1

0

0

8

1.24

1.41

58.9

-0.71

-0.45

13.6

82

5

5

5

7

1

0

0

9

1.98

2.10

62.7

-1.16

-0.44

17.6

78

4

5

1

3

1

1

0

10

1.29

1.42

67.1

-0.45

-0.33

9.2

77

4

5

4

8

2

1

0

11

2.19

3.11

84.2

-1.15

-0.29

16.9

79

4

6

6

8

1

3

0

12

2.06

2.09

91.0

-0.61

-0.25

12.8

75

3

5

4

10

2

3

0

13

1.24

1.39

115.7

-0.73

-0.38

12.7

79

7

7

8

14

1

2

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.