spacer
spacer

PDBsum entry 2ppo

Go to PDB code: 
Top Page protein tunnels links
Tunnel analysis for: 2ppo calculated with MOLE 2.0 PDB id
2ppo
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.71 6.4 -0.44 -0.51 5.1 91 1 0 1 2 0 0 0  
2 1.53 8.9 0.51 -0.21 3.3 83 1 0 1 2 1 0 0  
3 1.61 10.9 -1.60 -0.53 19.3 87 2 1 1 2 0 0 0  
4 1.60 11.3 -1.09 -0.58 13.5 79 2 1 1 1 1 0 0  
5 2.43 3.8 -0.39 0.00 22.1 90 1 1 0 3 0 0 0  
6 2.25 8.3 0.06 0.02 17.1 87 1 2 0 2 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer