PDBsum entry 2pm9 Go to PDB code:  Tunnel analysis for: 2pm9 calculated with MOLE 2.0 PDB id 2pm9 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.33 1.53 26.8 -1.28 -0.31 16.1 86 5 3 4 4 1 2 0   2 1.17 1.30 36.0 -1.43 -0.49 14.7 83 4 3 4 4 3 1 0   3 1.32 1.53 44.0 -0.94 -0.24 12.6 84 5 2 4 6 3 1 0   4 1.15 1.17 37.5 -0.60 -0.33 10.4 81 2 4 2 4 2 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.