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PDBsum entry 2pkg

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Hydrolase regulator/viral protein PDB id
2pkg
Contents
Protein chains
579 a.a.
80 a.a.
Metals
_ZN ×4

References listed in PDB file
Key reference
Title Structural and biochemical insights into the regulation of protein phosphatase 2a by small t antigen of sv40.
Authors Y.Chen, Y.Xu, Q.Bao, Y.Xing, Z.Li, Z.Lin, J.B.Stock, P.D.Jeffrey, Y.Shi.
Ref. Nat Struct Mol Biol, 2007, 14, 527-534. [DOI no: 10.1038/nsmb1254]
PubMed id 17529992
Abstract
The small t antigen (ST) of DNA tumor virus SV40 facilitates cellular transformation by disrupting the functions of protein phosphatase 2A (PP2A) through a poorly defined mechanism. The crystal structure of the core domain of SV40 ST bound to the scaffolding subunit of human PP2A reveals that the ST core domain has a novel zinc-binding fold and interacts with the conserved ridge of HEAT repeats 3-6, which overlaps with the binding site for the B' (also called PR61 or B56) regulatory subunit. ST has a lower binding affinity than B' for the PP2A core enzyme. Consequently, ST does not efficiently displace B' from PP2A holoenzymes in vitro. Notably, ST inhibits PP2A phosphatase activity through its N-terminal J domain. These findings suggest that ST may function mainly by inhibiting the phosphatase activity of the PP2A core enzyme, and to a lesser extent by modulating assembly of the PP2A holoenzymes.
Figure 2.
Figure 2. Structural features of the core domain of ST. (a) Sequence alignment of ST from SV40 and ST and MT from polyomavirus. Yellow, conserved residues; red, zinc-binding residues; blue squares and magenta triangles, residues that interact with the A subunit of PP2A through hydrogen bonds and van der Waals contacts, respectively; purple asterisks, residues whose mutation abrogates interaction with the A subunit^18, ^35. (b) Superposition showing structural similarity between zinc-binding motifs 1 and 2 in ST (colored yellow and orange, respectively).
Figure 3.
Figure 3. Recognition of the A subunit of PP2A by ST. (a) Close-up view of core domain of ST bound to HEAT repeats 3–6 of the A subunit of PP2A, colored as in Figure 1. (b) Stereo view of ST-A interactions. Orange sticks, side chains; red dotted lines, hydrogen bonds. (c) Almost all the interface residues in the A subunit of PP2A map to the conserved ridge region of HEAT repeats 4–6.
The above figures are reprinted by permission from Macmillan Publishers Ltd: Nat Struct Mol Biol (2007, 14, 527-534) copyright 2007.
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