spacer
spacer

PDBsum entry 2pc6

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 2pc6 calculated with MOLE 2.0 PDB id
2pc6
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
6 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.24 1.31 31.7 0.04 -0.24 9.2 88 1 2 4 7 0 1 0  MSE 9 C MSE 46 C
2 1.17 1.23 90.0 -0.67 -0.29 14.5 81 6 7 6 9 2 2 1  
3 1.19 1.23 104.9 0.43 -0.09 6.7 84 3 5 8 19 3 2 0  MSE 9 D MSE 46 D
4 1.51 1.54 114.8 -1.10 -0.27 15.8 86 7 5 7 13 2 2 0  MSE 9 D MSE 46 D
5 1.99 1.98 139.8 -2.21 -0.61 20.9 88 10 7 9 2 1 1 1  
6 1.13 1.24 161.1 -1.68 -0.44 17.1 86 10 9 8 7 3 2 0  
7 1.34 2.16 169.0 -1.72 -0.59 19.8 88 7 9 12 4 1 2 1  MSE 1 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer