PDBsum entry 2pa5 Go to PDB code:  Tunnel analysis for: 2pa5 calculated with MOLE 2.0 PDB id 2pa5 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.33 1.57 15.0 -0.23 0.15 18.0 78 2 0 0 5 1 0 0   2 1.33 1.57 15.3 -0.34 -0.20 7.1 81 1 0 3 7 1 0 0   3 1.19 1.27 16.9 0.70 0.52 2.5 71 1 0 1 4 3 0 0   4 1.19 1.52 19.5 0.43 0.46 4.6 72 1 0 2 4 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.