spacer
spacer

PDBsum entry 2p9p

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 2p9p calculated with MOLE 2.0 PDB id
2p9p
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
7 pores, coloured by radius 9 pores, coloured by radius 9 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.88 2.08 28.4 -1.42 -0.37 18.1 81 5 2 0 1 2 0 0  CA 500 A ADP 501 A
2 1.17 1.16 31.7 -1.48 -0.44 15.3 82 1 2 3 2 2 1 0  
3 1.53 1.54 32.9 -1.34 -0.27 18.6 77 6 2 0 2 2 0 0  CA 500 A ADP 501 A
4 1.18 1.18 42.4 -2.23 -0.62 20.6 84 3 4 5 1 1 1 0  
5 1.47 3.21 65.2 -2.39 -0.66 21.5 91 7 5 10 2 0 2 0  
6 1.28 1.65 82.3 -1.36 -0.24 19.8 84 7 3 2 5 2 1 0  
7 1.11 1.62 84.4 -1.28 -0.21 19.2 86 9 5 8 6 3 0 0  
8 1.17 1.65 94.5 -1.12 -0.15 21.2 82 7 5 3 8 2 2 0  
9 1.24 3.98 146.1 -1.77 -0.50 24.4 81 12 8 6 7 0 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer