PDBsum entry 2p5w

Tunnel analysis for: 2p5w calculated with

MOLE 2.0

PDB id

2p5w

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

0 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.19

1.37

23.4

0.15

0.00

16.6

80

2

3

0

5

1

1

0

2

1.18

1.38

30.2

0.06

-0.10

9.4

75

2

1

1

6

2

3

0

3

1.17

1.38

36.3

-0.18

-0.10

13.1

80

3

1

1

6

2

3

0

4

1.18

1.36

42.0

-0.20

-0.18

11.4

81

3

2

3

7

1

3

1

5

1.58

1.58

16.0

-0.14

-0.22

8.4

80

1

3

2

1

2

0

0

GOL 1003 D

6

1.45

2.04

15.6

-1.88

-0.24

24.3

82

3

1

3

2

1

1

0

GOL 1008 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.