PDBsum entry 2p3f

Tunnel analysis for: 2p3f calculated with

MOLE 2.0

PDB id

2p3f

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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with HETATM:

without HETATM:

9 tunnels, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.36

1.54

19.1

-0.89

-0.60

7.0

73

0

2

2

1

2

0

0

2

1.17

1.28

24.9

-0.42

-0.44

8.6

82

0

3

2

5

2

0

0

3

1.31

1.52

25.8

-1.35

-0.46

18.0

75

3

3

3

2

1

0

1

4

1.17

1.32

26.2

-0.27

-0.22

8.6

75

1

3

2

1

2

0

0

5

1.38

1.53

31.4

-0.88

-0.63

7.5

70

1

2

3

1

1

1

1

6

1.19

1.34

31.8

-0.95

-0.47

10.8

74

2

2

3

2

1

0

1

7

1.17

1.30

37.1

-0.56

-0.47

9.7

79

1

3

3

5

1

1

1

8

1.18

1.31

37.9

-0.74

-0.39

12.6

81

2

3

3

6

1

0

1

9

1.17

1.31

40.6

-0.38

-0.28

9.1

70

2

3

4

2

2

1

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.