 |
PDBsum entry 2ozs
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 2ozs calculated with MOLE 2.0
|
PDB id
|
|
|
|
2ozs
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Tunnels calculated on whole structure |
 |
Tunnels calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
0 tunnels,
coloured by tunnel radius |
 |
8 tunnels,
coloured by
tunnel radius
|
8 tunnels,
coloured as in list below
|
|
|
 |
 |
 |
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.50 |
1.61 |
33.2 |
-0.54 |
-0.16 |
12.2 |
78 |
 |
0 |
4 |
2 |
4 |
3 |
2 |
0 |
 |
|
 |
 |
2 |
 |
1.50 |
1.61 |
33.2 |
-1.16 |
-0.32 |
16.9 |
84 |
2 |
3 |
4 |
4 |
2 |
0 |
0 |
|
 |
3 |
 |
1.50 |
1.61 |
37.3 |
-0.90 |
-0.32 |
17.2 |
85 |
1 |
5 |
4 |
4 |
2 |
0 |
0 |
|
 |
4 |
 |
1.51 |
1.61 |
38.2 |
-0.33 |
-0.14 |
10.6 |
81 |
0 |
4 |
4 |
5 |
3 |
1 |
0 |
|
 |
5 |
 |
1.29 |
1.38 |
38.7 |
-1.42 |
-0.63 |
18.9 |
87 |
6 |
2 |
2 |
1 |
0 |
0 |
0 |
DC 102 P DA 112 P DA 7 T DT 8 T DG 9 T DA 10 T DC 11 T DA 12 T
|
 |
6 |
 |
1.37 |
1.42 |
43.6 |
-1.72 |
-0.51 |
18.4 |
80 |
6 |
1 |
2 |
0 |
1 |
1 |
0 |
DT 108 P DC 109 P DA 110 P DA 112 P DA 7 T DT 8 T DG 9 T DA 10 T DC 11 T
|
 |
7 |
 |
1.20 |
1.22 |
49.4 |
-1.78 |
-0.61 |
20.3 |
84 |
5 |
1 |
2 |
0 |
0 |
1 |
0 |
DT 106 P DG 107 P DT 108 P DC 109 P DA 110 P DA 112 P DA 7 T DT 8 T DG 9 T DA 10 T DC 11 T DA 12 T DG 13 T DC 14 T
|
 |
8 |
 |
1.25 |
1.39 |
18.6 |
-1.38 |
-0.39 |
9.8 |
67 |
2 |
1 |
1 |
0 |
2 |
1 |
0 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |