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PDBsum entry 2ozs

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Top Page protein dna_rna ligands metals tunnels links
Tunnel analysis for: 2ozs calculated with MOLE 2.0 PDB id
2ozs
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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0 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.50 1.61 33.2 -0.54 -0.16 12.2 78 0 4 2 4 3 2 0  
2 1.50 1.61 33.2 -1.16 -0.32 16.9 84 2 3 4 4 2 0 0  
3 1.50 1.61 37.3 -0.90 -0.32 17.2 85 1 5 4 4 2 0 0  
4 1.51 1.61 38.2 -0.33 -0.14 10.6 81 0 4 4 5 3 1 0  
5 1.29 1.38 38.7 -1.42 -0.63 18.9 87 6 2 2 1 0 0 0  DC 102 P DA 112 P DA 7 T DT 8 T DG 9 T DA 10 T DC
11 T DA 12 T
6 1.37 1.42 43.6 -1.72 -0.51 18.4 80 6 1 2 0 1 1 0  DT 108 P DC 109 P DA 110 P DA 112 P DA 7 T DT 8 T
DG 9 T DA 10 T DC 11 T
7 1.20 1.22 49.4 -1.78 -0.61 20.3 84 5 1 2 0 0 1 0  DT 106 P DG 107 P DT 108 P DC 109 P DA 110 P DA
112 P DA 7 T DT 8 T DG 9 T DA 10 T DC 11 T DA 12
T DG 13 T DC 14 T
8 1.25 1.39 18.6 -1.38 -0.39 9.8 67 2 1 1 0 2 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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