spacer
spacer

PDBsum entry 2oyu

Go to PDB code: 
Top Page protein ligands tunnels links
Tunnel analysis for: 2oyu calculated with MOLE 2.0 PDB id
2oyu
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
4 tunnels, coloured by tunnel radius 12 tunnels, coloured by tunnel radius 12 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.47 31.8 0.78 0.24 3.9 84 1 0 5 5 5 1 0  700 IMS P
2 1.51 32.1 0.72 0.21 4.3 84 1 0 5 5 5 1 0  700 IMS P
3 1.44 36.3 0.18 0.17 7.8 77 3 0 3 5 6 2 0  
4 1.44 36.6 0.31 0.19 6.9 77 3 0 3 5 6 2 0  
5 1.48 37.4 0.46 0.27 7.9 82 2 0 5 6 5 1 0  700 IMS P,750 BOG P
6 1.49 37.7 0.51 0.27 8.2 84 2 0 5 5 5 1 0  700 IMS P,750 BOG P
7 1.49 38.1 1.25 0.62 7.7 76 3 0 1 11 4 1 0  700 IMS P,751 BOG P
8 1.48 38.4 1.21 0.60 7.8 76 3 0 1 11 4 1 0  700 IMS P,751 BOG P
9 1.49 46.5 0.66 0.41 10.5 77 3 1 1 11 4 1 0  700 IMS P,751 BOG P
10 1.49 46.8 0.69 0.41 10.2 77 3 1 1 11 4 1 0  700 IMS P,751 BOG P
11 1.49 47.8 -0.33 -0.07 8.4 84 3 0 8 5 5 0 0  700 IMS P
12 1.50 48.1 -0.06 0.02 7.5 83 3 0 8 6 6 0 0  700 IMS P

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer