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PDBsum entry 2onk

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 2onk calculated with MOLE 2.0 PDB id
2onk
Pores calculated on whole structure Pores calculated excluding ligands

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13 pores, coloured by radius 16 pores, coloured by radius 16 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.40 2.04 29.7 1.37 0.52 12.1 89 2 1 0 11 1 0 0  
2 1.72 1.99 35.2 -2.12 -0.33 23.7 77 7 2 0 2 1 2 0  
3 1.39 2.07 43.1 -1.47 -0.56 18.8 83 4 5 4 3 0 2 0  
4 1.35 1.55 48.4 -0.43 0.00 11.1 77 4 4 5 8 5 0 0  
5 1.73 1.85 53.3 0.21 0.20 12.0 88 3 3 3 14 1 0 0  
6 2.01 2.01 59.9 -1.32 -0.65 13.7 89 2 4 6 3 1 2 0  
7 1.60 1.73 73.9 -1.13 -0.14 19.2 78 8 5 5 7 6 0 0  
8 2.01 2.01 74.3 -1.06 -0.47 15.8 88 6 4 7 6 1 1 0  MG 702 B PO4 802 B
9 2.17 2.64 88.7 -2.10 -0.48 29.0 84 11 9 7 6 3 0 0  
10 2.87 2.86 91.4 -1.10 -0.48 11.4 86 7 4 7 7 2 2 0  
11 1.17 1.42 113.2 -0.97 -0.23 19.1 81 12 7 8 15 4 2 0  
12 1.47 1.59 66.1 -1.15 -0.35 17.6 85 6 5 5 4 2 2 0  MG 703 F PO4 803 F
13 1.20 3.07 66.6 -0.81 -0.32 17.2 93 7 2 5 6 0 0 0  MG 704 G PO4 804 G
14 1.47 1.59 80.9 -1.18 -0.37 19.1 87 8 5 7 6 3 1 0  MG 703 F PO4 803 F
15 1.13 3.09 108.3 -1.24 -0.34 22.0 87 12 5 8 9 2 1 0  MG 703 F PO4 803 F MG 704 G PO4 804 G
16 2.31 4.43 41.4 -0.84 -0.11 18.2 86 3 3 4 9 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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