 |
PDBsum entry 2omy
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 2omy calculated with  MOLE 2.0
|
PDB id
|
|
|
|
2omy
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
4 tunnels,
coloured by tunnel radius |
|
4 tunnels,
coloured by
tunnel radius
|
4 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.44 |
3.20 |
20.8 |
-1.42 |
-0.32 |
16.9 |
84 |
|
2 |
2 |
3 |
2 |
2 |
2 |
0 |
|
|
 |
|
2 |
 |
1.44 |
3.10 |
30.0 |
-1.52 |
-0.41 |
22.4 |
81 |
2 |
5 |
1 |
2 |
2 |
2 |
0 |
|
|
3 |
 |
1.45 |
3.23 |
45.0 |
-1.82 |
-0.39 |
21.3 |
86 |
5 |
6 |
9 |
3 |
3 |
2 |
0 |
|
 |
4 |
 |
1.45 |
3.23 |
47.0 |
-1.47 |
-0.26 |
19.2 |
84 |
5 |
6 |
7 |
4 |
3 |
2 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program