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PDBsum entry 2omw

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protein metals Protein-protein interface(s) links
Cell invasion/cell adhesion PDB id
2omw

 

 

 

 

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Contents
Protein chains
461 a.a. *
105 a.a. *
Metals
_CL ×5
Waters ×888
* Residue conservation analysis
PDB id:
2omw
Name: Cell invasion/cell adhesion
Title: Crystal structure of inla s192n y369s/mec1 complex
Structure: Internalin-a. Chain: a. Fragment: internalin domain. Engineered: yes. Mutation: yes. Epithelial-cadherin. Chain: b. Fragment: n-terminal domain of murine e-cadherin. Engineered: yes
Source: Listeria monocytogenes. Organism_taxid: 169963. Strain: egd-e. Gene: inla. Expressed in: escherichia coli bl21. Expression_system_taxid: 511693. Mus musculus. House mouse. Organism_taxid: 10090.
Resolution:
1.85Å     R-factor:   0.167     R-free:   0.207
Authors: T.Wollert,D.W.Heinz,W.D.Schubert
Key ref:
T.Wollert et al. (2007). Extending the host range of Listeria monocytogenes by rational protein design. Cell, 129, 891-902. PubMed id: 17540170 DOI: 10.1016/j.cell.2007.03.049
Date:
23-Jan-07     Release date:   05-Jun-07    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
P0DJM0  (INLA_LISMO) -  Internalin A from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Seq:
Struc:
 
Seq:
Struc:
800 a.a.
461 a.a.*
Protein chain
Pfam   ArchSchema ?
P09803  (CADH1_MOUSE) -  Cadherin-1 from Mus musculus
Seq:
Struc:
 
Seq:
Struc:
884 a.a.
105 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 9 residue positions (black crosses)

 

 
DOI no: 10.1016/j.cell.2007.03.049 Cell 129:891-902 (2007)
PubMed id: 17540170  
 
 
Extending the host range of Listeria monocytogenes by rational protein design.
T.Wollert, B.Pasche, M.Rochon, S.Deppenmeier, J.van den Heuvel, A.D.Gruber, D.W.Heinz, A.Lengeling, W.D.Schubert.
 
  ABSTRACT  
 
In causing disease, pathogens outmaneuver host defenses through a dedicated arsenal of virulence determinants that specifically bind or modify individual host molecules. This dedication limits the intruder to a defined range of hosts. Newly emerging diseases mostly involve existing pathogens whose arsenal has been altered to allow them to infect previously inaccessible hosts. We have emulated this chance occurrence by extending the host range accessible to the human pathogen Listeria monocytogenes by the intestinal route to include the mouse. Analyzing the recognition complex of the listerial invasion protein InlA and its human receptor E-cadherin, we postulated and verified amino acid substitutions in InlA to increase its affinity for E-cadherin. Two single substitutions increase binding affinity by four orders of magnitude and extend binding specificity to include formerly incompatible murine E-cadherin. By rationally adapting a single protein, we thus create a versatile murine model of human listeriosis.
 
  Selected figure(s)  
 
Figure 1.
Figure 1. Re-engineered Variants of Internalin (InlA) in Complex with the N-Terminal Domain of Human E-Cadherin
(A) Superposition of InlA/hEC1 (violet) and InlA^S192N-Y369S/hEC1 (gray).
(B) Critical residues near mutation site S192N[InlA] are shown as ball and stick. Asn192[InlA] adds a direct H bond to the carbonyl oxygen of Phe17[hEC1].
(C) The mutation Y369S[InlA] introduces a water-bridged interaction to Asn27[hEC1].
Figure 5.
Figure 5. Survival of Mice Intragastrically Infected with Lmo-EGD and Lmo-InlA^m and Associated Bacterial Organ Loads over Time
Survival curves (A) and organ loads (B–F) of female C57BL/6J mice inoculated intragastrically with Lmo-EGD (dashed curve, ○) or Lmo-InlA^m (solid curves, ●). (A) shows that Lmo-InlA^m exhibit more than 1000-fold higher virulence than wild-type Lmo-EGD (inocula as indicated, n = 10 for each bacterial strain and experiment). (B–F) shows that 1 × 10^10 bacteria of either strain were administered intragastrically to analyze kinetics of bacterial growth (n = 6 for 24 h p.i. and n = 12 for all others). Organ loads were ascertained at five time points in the stomach (B), small intestine (C), mesenteric lymph nodes (D), spleen (E), and liver (F). All data are from two independent experiments. The bar represents the median for each time point and genotype; 95% confidence intervals are indicated. Statistical significance by Mann-Whitney U nonparametric test: ^*p < 0.05, ^**p < 0.01, and ^***p < 0.001.
 
  The above figures are reprinted by permission from Cell Press: Cell (2007, 129, 891-902) copyright 2007.  
  Figures were selected by the author.  
 
 
    Author's comment    
 
  In causing disease, pathogens outmaneuver host defenses through a dedicated arsenal of virulence determinants that specifically bind or modify individual host molecules. This dedication limits the intruder to a defined range of hosts. Newly emerging human diseases therefore most often involve existing pathogens whose arsenal has been altered to allow them to infect previously inaccessible hosts. We have simulated this chance occurrence by extending the host range of the human pathogen Listeria monocytogenes via the intestine to include the mouse. Amino acid substitutions in the listerial invasion protein InlA that increase the affinity for its receptor human E-cadherin were identified based on the recognition complex between these two proteins and verified by isothermal titration calorimetry. Two single substitutions increase binding affinity by four orders of magnitude and extend binding specificity to include formerly incompatible murine E-cadherin. By rationally adapting a single protein, a versatile murine model of human listeriosis has thus been created.  

Literature references that cite this PDB file's key reference

  PubMed id Reference
21266727 F.Alonzo, L.D.Bobo, D.J.Skiest, and N.E.Freitag (2011).
Evidence for subpopulations of Listeria monocytogenes with enhanced invasion of cardiac cells.
  J Med Microbiol, 60, 423-434.  
21204945 S.Chiba, T.Nagai, T.Hayashi, Y.Baba, S.Nagai, and S.Koyasu (2011).
Listerial invasion protein internalin B promotes entry into ileal Peyer's patches in vivo.
  Microbiol Immunol, 55, 123-129.  
21133988 Z.Shao, X.Pan, X.Li, W.Liu, M.Han, C.Wang, J.Wang, F.Zheng, M.Cao, and J.Tang (2011).
HtpS, a novel immunogenic cell surface-exposed protein of Streptococcus suis, confers protection in mice.
  FEMS Microbiol Lett, 314, 174-182.  
21144051 I.R.Monk, P.G.Casey, C.Hill, and C.G.Gahan (2010).
Directed evolution and targeted mutagenesis to murinize Listeria monocytogenes internalin A for enhanced infectivity in the murine oral infection model.
  BMC Microbiol, 10, 318.  
21151923 J.C.Bruno, and N.E.Freitag (2010).
Constitutive activation of PrfA tilts the balance of Listeria monocytogenes fitness towards life within the host versus environmental survival.
  PLoS One, 5, e15138.  
20107601 J.R.Robbins, K.M.Skrzypczynska, V.B.Zeldovich, M.Kapidzic, and A.I.Bakardjiev (2010).
Placental syncytiotrophoblast constitutes a major barrier to vertical transmission of Listeria monocytogenes.
  PLoS Pathog, 6, e1000732.  
20485518 M.Pentecost, J.Kumaran, P.Ghosh, and M.R.Amieva (2010).
Listeria monocytogenes internalin B activates junctional endocytosis to accelerate intestinal invasion.
  PLoS Pathog, 6, e1000900.  
21155663 P.Velge, and S.M.Roche (2010).
Variability of Listeria monocytogenes virulence: a result of the evolution between saprophytism and virulence?
  Future Microbiol, 5, 1799-1821.  
19818015 B.Xayarath, H.Marquis, G.C.Port, and N.E.Freitag (2009).
Listeria monocytogenes CtaP is a multifunctional cysteine transport-associated protein required for bacterial pathogenesis.
  Mol Microbiol, 74, 956-973.  
19154329 C.U.Riedel, I.R.Monk, P.G.Casey, M.S.Waidmann, C.G.Gahan, and C.Hill (2009).
AgrD-dependent quorum sensing affects biofilm formation, invasion, virulence and global gene expression profiles in Listeria monocytogenes.
  Mol Microbiol, 71, 1177-1189.  
19452560 K.L.Hindle, J.Bella, and S.C.Lovell (2009).
Quantitative analysis and prediction of curvature in leucine-rich repeat proteins.
  Proteins, 77, 342-358.  
  20066101 M.Bonazzi, M.Lecuit, and P.Cossart (2009).
Listeria monocytogenes Internalin and E-cadherin: From Bench to Bedside.
  Cold Spring Harbor Perspect Biol, 1, a003087.  
19648949 N.E.Freitag, G.C.Port, and M.D.Miner (2009).
Listeria monocytogenes - from saprophyte to intracellular pathogen.
  Nat Rev Microbiol, 7, 623-628.  
19444238 O.Disson, G.Nikitas, S.Grayo, O.Dussurget, P.Cossart, and M.Lecuit (2009).
Modeling human listeriosis in natural and genetically engineered animals.
  Nat Protoc, 4, 799-810.  
19482952 S.Innocentin, V.Guimarães, A.Miyoshi, V.Azevedo, P.Langella, J.M.Chatel, and F.Lefèvre (2009).
Lactococcus lactis expressing either Staphylococcus aureus fibronectin-binding protein A or Listeria monocytogenes internalin A can efficiently internalize and deliver DNA in human epithelial cells.
  Appl Environ Microbiol, 75, 4870-4878.  
19296488 S.Mostowy, and P.Cossart (2009).
Cytoskeleton rearrangements during Listeria infection: clathrin and septins as new players in the game.
  Cell Motil Cytoskeleton, 66, 816-823.  
17876564 A.Popov, and J.L.Schultze (2008).
IDO-expressing regulatory dendritic cells in cancer and chronic infection.
  J Mol Med, 86, 145-160.  
18462388 D.A.Drevets, and M.S.Bronze (2008).
Listeria monocytogenes: epidemiology, human disease, and mechanisms of brain invasion.
  FEMS Immunol Med Microbiol, 53, 151-165.  
18791029 K.K.Nightingale, R.A.Ivy, A.J.Ho, E.D.Fortes, B.L.Njaa, R.M.Peters, and M.Wiedmann (2008).
inlA premature stop codons are common among Listeria monocytogenes isolates from foods and yield virulence-attenuated strains that confer protection against fully virulent strains.
  Appl Environ Microbiol, 74, 6570-6583.  
18541651 P.Lauer, B.Hanson, E.E.Lemmens, W.Liu, W.S.Luckett, M.L.Leong, H.E.Allen, J.Skoble, K.S.Bahjat, N.E.Freitag, D.G.Brockstedt, and T.W.Dubensky (2008).
Constitutive Activation of the PrfA regulon enhances the potency of vaccines based on live-attenuated and killed but metabolically active Listeria monocytogenes strains.
  Infect Immun, 76, 3742-3753.  
17943119 A.P.Bhavsar, J.A.Guttman, and B.B.Finlay (2007).
Manipulation of host-cell pathways by bacterial pathogens.
  Nature, 449, 827-834.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time.

 

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