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PDBsum entry 2okj

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Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 2okj calculated with MOLE 2.0 PDB id
2okj
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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11 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.71 8.9 -0.40 -0.18 10.7 84 1 0 1 2 1 0 0  
2 2.10 7.8 1.25 0.78 7.5 79 1 1 0 3 2 0 0  
3 2.13 10.6 0.63 0.64 10.6 80 1 1 0 3 2 0 0  
4 1.43 11.5 1.65 0.33 4.5 73 0 1 1 4 1 0 0  
5 1.44 13.2 1.14 0.06 2.0 72 0 0 1 3 1 1 0  
6 1.36 8.4 0.53 0.19 4.3 64 0 1 2 3 2 0 0  
7 1.30 8.2 0.11 0.44 22.5 78 2 2 0 3 1 0 0  
8 1.56 7.8 -1.12 -0.43 17.1 74 1 1 2 1 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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