PDBsum entry 2ogi

Hydrolase

PDB id: 2ogi

Contents

Protein chains

193 a.a. *

Ligands

GDP ×2

MES

Metals

_FE ×4

_CL ×3

Waters ×272

* Residue conservation analysis

PDB id:

2ogi

Name:

Hydrolase

Title:

Crystal structure of a putative metal dependent phosphohydrolase (sag1661) from streptococcus agalactiae serogroup v at 1.85 a resolution

Structure:

Hypothetical protein sag1661. Chain: a, b. Synonym: conserved hypothetical protein tigr00488. Engineered: yes

Source:

Streptococcus agalactiae serogroup v. Organism_taxid: 216466. Strain: 2603 v/r. Atcc: baa-611. Gene: np_688652.1, sag1661. Expressed in: escherichia coli. Expression_system_taxid: 562.

Resolution:

1.85Å R-factor: 0.174 R-free: 0.229

Authors:

Joint Center For Structural Genomics (Jcsg)

Key ref:

Joint center for structural genomics (jcsg) Crystal structure of conserved hypothetical protein tigr00488 (np_688652.1) from streptococcus agalactiae 2603 at 1.85 a resolution. To be published, .

Date:

05-Jan-07 Release date: 16-Jan-07

Protein chains

Q8DY32  (Q8DY32_STRA5) -  Bis(5'-nucleosyl)-tetraphosphatase, symmetrical from Streptococcus agalactiae serotype V (strain ATCC BAA-611 / 2603 V/R)

Seq: 195 a.a.

Struc: 193 a.a.

Enzyme reactions

• Enzyme class: E.C.3.6.1.41 - bis(5'-nucleosyl)-tetraphosphatase (symmetrical).
• Reaction: P₁,P₄-bis(5'-adenosyl) tetraphosphate + H2O = 2 ADP + 2 H⁺

P(1),P(4)-bis(5'-adenosyl) tetraphosphate + H2O = 2 × ADP (Bound ligand (Het Group name = GDP) matches with 96.43% similarity) + 2 × H(+)

Molecule diagrams generated from .mol files obtained from the KEGG ftp site