spacer
spacer

PDBsum entry 2oge

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 2oge calculated with MOLE 2.0 PDB id
2oge
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
3 pores, coloured by radius 10 pores, coloured by radius 10 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.70 2.70 31.2 -2.57 -0.66 32.1 80 5 8 1 2 1 1 0  
2 1.33 1.33 43.8 -0.59 -0.14 11.6 70 8 1 2 5 5 2 0  LLP 193 B EDO 1302 B EDO 1303 B
3 2.82 3.00 48.6 -1.59 -0.40 23.2 80 8 4 2 5 1 3 0  
4 2.80 2.99 53.2 -2.04 -0.48 28.7 81 10 6 1 4 1 1 0  
5 1.61 1.83 34.0 -0.99 0.07 15.4 78 3 1 4 3 4 1 0  CL 1306 D
6 1.33 1.33 45.1 -0.54 -0.16 11.4 72 6 1 2 5 4 2 0  LLP 193 C EDO 1305 C
7 1.33 1.33 49.4 -0.63 -0.09 9.9 77 7 0 4 5 4 3 0  LLP 193 C CL 1306 D
8 1.59 1.76 31.6 -0.52 0.24 13.0 73 4 1 2 4 4 1 0  EDO 1300 A CL 1301 B EDO 1304 B
9 1.35 1.35 44.8 -0.78 -0.11 13.1 71 8 1 2 5 4 2 0  LLP 193 A EDO 1300 A EDO 1303 A EDO 1305 A
10 1.35 1.35 50.6 -0.80 -0.02 11.3 76 8 0 4 4 5 3 0  LLP 193 A EDO 1303 A EDO 1305 A CL 1301 B EDO
1304 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer