PDBsum entry 2ode Go to PDB code:  Tunnel analysis for: 2ode calculated with MOLE 2.0 PDB id 2ode Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 1.29 29.9 -1.47 -0.56 16.3 89 3 2 6 2 1 0 0  GDP 1001 A 2 1.36 1.45 39.3 -1.82 -0.61 21.6 86 6 4 6 2 1 0 0  GDP 1001 A 3 1.36 1.45 39.6 -1.71 -0.39 19.5 86 7 3 5 3 3 0 0  GDP 1001 A 4 1.40 1.46 46.8 -2.50 -0.72 22.8 86 6 4 9 2 1 0 0  GDP 1001 A 5 1.37 1.45 46.9 -1.34 -0.38 13.1 82 4 2 6 3 3 1 0  GDP 1001 A 6 1.37 1.45 50.8 -2.28 -0.69 18.1 83 6 3 7 3 2 0 0  GDP 1001 A 7 1.37 1.47 52.5 -2.10 -0.74 19.9 86 5 5 10 3 1 0 0  GDP 1001 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.