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PDBsum entry 2oap

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 2oap calculated with MOLE 2.0 PDB id
2oap
Pores calculated on whole structure Pores calculated excluding ligands

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1 pore, coloured by radius 9 pores, coloured by radius 9 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.73 1.73 26.3 -0.08 0.26 13.0 72 2 1 2 5 4 0 0  MSE 121 1
2 1.41 1.54 38.5 -0.07 0.15 15.2 66 3 4 1 3 4 0 0  MSE 453 2 MSE 468 2
3 1.41 1.55 40.6 0.21 0.32 10.1 71 5 2 1 4 5 0 0  MSE 453 2 MSE 468 2
4 2.27 2.58 42.0 -2.27 -0.41 26.6 82 8 5 3 2 3 0 0  ANP 512 1
5 1.28 1.88 44.4 0.35 0.43 8.8 66 2 2 1 4 4 1 0  MSE 446 2 MSE 453 2 MSE 468 2
6 2.26 2.58 46.2 -2.51 -0.49 28.6 82 9 5 3 3 2 0 0  ANP 512 1
7 1.21 3.00 71.4 1.23 0.33 6.2 76 3 2 3 15 5 0 0  MSE 354 2 MSE 372 2 MSE 453 2 MSE 468 2
8 1.46 1.74 182.9 -1.85 -0.51 20.1 79 18 8 8 9 4 2 0  ANP 512 1
9 2.13 3.72 31.2 -2.33 -0.62 28.1 85 7 4 0 1 0 0 0  MG 512 2 ANP 513 2

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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