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PDBsum entry 2o63

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protein ligands links
Transferase PDB id
2o63

 

 

 

 

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JSmol PyMol  
Contents
Protein chain
274 a.a. *
Ligands
IMD ×3
MYC
Waters ×192
* Residue conservation analysis
PDB id:
2o63
Name: Transferase
Title: Crystal structure of pim1 with myricetin
Structure: Proto-oncogene serine/threonine-protein kinase pim-1. Chain: a. Fragment: catalytic domain. Engineered: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: pim1. Expressed in: escherichia coli. Expression_system_taxid: 562
Resolution:
2.00Å     R-factor:   0.194     R-free:   0.218
Authors: S.Holder,M.Zemskova,C.Zhang,M.Tabrizizad,R.Bremer,J.W.Neidigh, M.B.Lilly
Key ref: S.Holder et al. (2007). Characterization of a potent and selective small-molecule inhibitor of the PIM1 kinase. Mol Cancer Ther, 6, 163-172. PubMed id: 17218638 DOI: 10.1158/1535-7163.MCT-06-0397
Date:
06-Dec-06     Release date:   13-Feb-07    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
P11309  (PIM1_HUMAN) -  Serine/threonine-protein kinase pim-1 from Homo sapiens
Seq:
Struc:
313 a.a.
274 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.2.7.11.1  - non-specific serine/threonine protein kinase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction:
1. L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H+
2. L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H+
L-seryl-[protein]
+ ATP
= O-phospho-L-seryl-[protein]
+ ADP
+ H(+)
L-threonyl-[protein]
+ ATP
= O-phospho-L-threonyl-[protein]
+ ADP
+ H(+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    reference    
 
 
DOI no: 10.1158/1535-7163.MCT-06-0397 Mol Cancer Ther 6:163-172 (2007)
PubMed id: 17218638  
 
 
Characterization of a potent and selective small-molecule inhibitor of the PIM1 kinase.
S.Holder, M.Zemskova, C.Zhang, M.Tabrizizad, R.Bremer, J.W.Neidigh, M.B.Lilly.
 
  ABSTRACT  
 
The pim-1 kinase is a true oncogene that has been implicated in the development of leukemias, lymphomas, and prostate cancer, and is the target of drug development programs. We have used experimental approaches to identify a selective, cell-permeable, small-molecule inhibitor of the pim-1 kinase to foster basic and translational studies of the enzyme. We used an ELISA-based kinase assay to screen a diversity library of potential kinase inhibitors. The flavonol quercetagetin (3,3',4',5,6,7-hydroxyflavone) was identified as a moderately potent, ATP-competitive inhibitor (IC(50), 0.34 micromol/L). Resolution of the crystal structure of PIM1 in complex with quercetagetin or two other flavonoids revealed a spectrum of binding poses and hydrogen-bonding patterns in spite of strong similarity of the ligands. Quercetagetin was a highly selective inhibitor of PIM1 compared with PIM2 and seven other serine-threonine kinases. Quercetagetin was able to inhibit PIM1 activity in intact RWPE2 prostate cancer cells in a dose-dependent manner (ED(50), 5.5 micromol/L). RWPE2 cells treated with quercetagetin showed pronounced growth inhibition at inhibitor concentrations that blocked PIM1 kinase activity. Furthermore, the ability of quercetagetin to inhibit the growth of other prostate epithelial cell lines varied in proportion to their levels of PIM1 protein. Quercetagetin can function as a moderately potent and selective, cell-permeable inhibitor of the pim-1 kinase, and may be useful for proof-of-concept studies to support the development of clinically useful PIM1 inhibitors.
 

Literature references that cite this PDB file's key reference

  PubMed id Reference
21062737 D.Morishita, M.Takami, S.Yoshikawa, R.Katayama, S.Sato, M.Kukimoto-Niino, T.Umehara, M.Shirouzu, K.Sekimizu, S.Yokoyama, and N.Fujita (2011).
Cell-permeable carboxyl-terminal p27(Kip1) peptide exhibits anti-tumor activity by inhibiting Pim-1 kinase.
  J Biol Chem, 286, 2681-2688.
PDB code: 3a99
20148891 B.Wright, L.A.Moraes, C.F.Kemp, W.Mullen, A.Crozier, J.A.Lovegrove, and J.M.Gibbins (2010).
A structural basis for the inhibition of collagen-stimulated platelet function by quercetin and structurally related flavonoids.
  Br J Pharmacol, 159, 1312-1325.  
19911008 K.Nihira, Y.Ando, T.Yamaguchi, Y.Kagami, Y.Miki, and K.Yoshida (2010).
Pim-1 controls NF-kappaB signalling by stabilizing RelA/p65.
  Cell Death Differ, 17, 689-698.  
  20145274 L.Brault, C.Gasser, F.Bracher, K.Huber, S.Knapp, and J.Schwaller (2010).
PIM serine/threonine kinases in the pathogenesis and therapy of hematologic malignancies and solid cancers.
  Haematologica, 95, 1004-1015.  
19711112 M.Willert, A.Augstein, D.M.Poitz, A.Schmeisser, R.H.Strasser, and R.C.Braun-Dullaeus (2010).
Transcriptional regulation of Pim-1 kinase in vascular smooth muscle cells and its role for proliferation.
  Basic Res Cardiol, 105, 267-277.  
20659021 N.Dzamko, M.Deak, F.Hentati, A.D.Reith, A.R.Prescott, D.R.Alessi, and R.J.Nichols (2010).
Inhibition of LRRK2 kinase activity leads to dephosphorylation of Ser(910)/Ser(935), disruption of 14-3-3 binding and altered cytoplasmic localization.
  Biochem J, 430, 405-413.  
20958956 N.M.Santio, R.L.Vahakoski, E.M.Rainio, J.A.Sandholm, S.S.Virtanen, M.Prudhomme, F.Anizon, P.Moreau, and P.J.Koskinen (2010).
Pim-selective inhibitor DHPCC-9 reveals Pim kinases as potent stimulators of cancer cell migration and invasion.
  Mol Cancer, 9, 279.  
20919829 N.S.Magnuson, Z.Wang, G.Ding, and R.Reeves (2010).
Why target PIM1 for cancer diagnosis and treatment?
  Future Oncol, 6, 1461-1478.  
  19724689 K.M.Gust, M.D.Hofer, S.R.Perner, R.Kim, A.M.Chinnaiyan, S.Varambally, P.Moller, L.Rinnab, M.A.Rubin, J.Greiner, M.Schmitt, R.Kuefer, and M.Ringhoffer (2009).
RHAMM (CD168) is overexpressed at the protein level and may constitute an immunogenic antigen in advanced prostate cancer disease.
  Neoplasia, 11, 956-963.  
  19568408 K.Peltola, M.Hollmen, S.M.Maula, E.Rainio, R.Ristamäki, M.Luukkaa, J.Sandholm, M.Sundvall, K.Elenius, P.J.Koskinen, R.Grenman, and S.Jalkanen (2009).
Pim-1 kinase expression predicts radiation response in squamocellular carcinoma of head and neck and is under the control of epidermal growth factor receptor.
  Neoplasia, 11, 629-636.  
19825806 S.M.Mumenthaler, P.Y.Ng, A.Hodge, D.Bearss, G.Berk, S.Kanekal, S.Redkar, P.Taverna, D.B.Agus, and A.Jain (2009).
Pharmacologic inhibition of Pim kinases alters prostate cancer cell growth and resensitizes chemoresistant cells to taxanes.
  Mol Cancer Ther, 8, 2882-2893.  
  19021050 E.D.Hsi, S.H.Jung, R.Lai, J.L.Johnson, J.R.Cook, D.Jones, S.Devos, B.D.Cheson, L.E.Damon, and J.Said (2008).
Ki67 and PIM1 expression predict outcome in mantle cell lymphoma treated with high dose therapy, stem cell transplantation and rituximab: a Cancer and Leukemia Group B 59909 correlative science study.
  Leuk Lymphoma, 49, 2081-2090.  
17698806 J.R.Gledhill, M.G.Montgomery, A.G.Leslie, and J.E.Walker (2007).
Mechanism of inhibition of bovine F1-ATPase by resveratrol and related polyphenols.
  Proc Natl Acad Sci U S A, 104, 13632-13637.
PDB codes: 2jiz 2jj1 2jj2
18198522 W.A.Peer, and A.S.Murphy (2007).
Flavonoids and auxin transport: modulators or regulators?
  Trends Plant Sci, 12, 556-563.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB code is shown on the right.

 

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