PDBsum entry 2o4h

Tunnel analysis for: 2o4h calculated with

MOLE 2.0

PDB id

2o4h

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

7 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.24

1.43

17.2

1.66

0.40

5.1

73

1

1

1

5

1

0

0

2

1.21

1.30

28.7

0.56

0.07

12.9

80

2

3

1

5

1

0

0

3

1.21

1.22

30.8

0.62

0.14

10.0

76

1

3

2

6

1

1

0

4

1.18

1.28

31.1

0.39

0.08

12.7

80

2

3

2

5

1

0

0

5

1.10

1.32

39.2

0.81

0.26

12.0

76

5

1

1

7

1

0

0

6

1.20

3.63

37.6

-2.12

-0.32

21.8

75

5

4

4

1

4

0

0

AS9 501 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.