PDBsum entry 2nvt Go to PDB code:  Pore analysis for: 2nvt calculated with MOLE 2.0 PDB id 2nvt Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 26 pores, coloured by radius 26 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 3.71 4.22 44.0 -0.22 -0.16 11.8 83 2 3 4 4 1 0 0  DC 8 T DA 9 T 2 2.62 3.00 52.6 -2.64 -0.30 34.1 83 7 4 4 3 0 0 0   3 3.03 3.20 60.9 -1.37 -0.64 16.3 81 6 5 3 3 2 0 0  DC 4 N DT 5 N DT 6 N DG 7 N DC 8 T DA 9 T DT 12 T DA 13 T DC 14 T DT 15 T 4 3.02 3.20 65.1 -0.61 -0.36 14.4 81 7 2 2 6 1 0 0  DC 4 N DT 5 N DT 6 N DG 7 N DC 8 T DT 12 T DA 13 T DC 14 T DT 15 T 5 1.38 1.46 69.2 -0.95 -0.08 17.3 79 11 5 7 9 6 2 0   6 2.32 5.41 74.3 -1.50 -0.23 20.6 77 6 5 4 4 3 3 0   7 1.34 1.49 81.1 -0.93 -0.20 20.2 85 7 8 4 9 2 0 0  DC 8 T DA 9 T 8 1.52 1.50 81.2 -1.17 -0.14 21.4 81 7 3 4 6 2 1 0  DC 8 T 9 1.85 1.83 82.4 -1.49 -0.42 17.2 77 7 8 6 5 5 2 0  DA 9 T 10 1.54 1.52 83.5 -0.76 -0.32 16.5 79 10 4 1 11 2 0 0  DC 4 N DT 5 N DT 6 N DG 7 N DC 8 T DT 12 T DA 13 T DC 14 T DT 15 T 11 2.37 4.91 96.7 -1.81 -0.30 25.5 80 11 8 6 6 3 1 0   12 2.92 2.91 106.1 -2.18 -0.71 23.9 88 8 5 7 2 0 2 0  DG 7 N DA 1 R DC 5 R DC 6 R DT 12 T DA 13 T DC 14 T DA 17 T DC 18 T DC 21 T DT 22 T DG 23 T DG 24 T DT 25 T 13 1.73 2.97 112.2 -1.25 -0.15 17.4 80 12 9 10 11 8 5 0   14 2.02 2.08 114.4 -2.15 -0.72 19.4 90 11 6 11 1 1 1 0  MG 2002 A DG 7 N DC 5 R DC 6 R DC 10 R DT 12 T DA 13 T DC 14 T DA 17 T DC 18 T DG 19 T DC 20 T G2P 3000 T 15 2.00 1.99 123.6 -2.09 -0.42 26.4 79 13 10 3 4 4 3 0   16 1.35 1.44 125.2 -1.42 -0.44 18.0 79 6 10 9 8 5 3 0   17 2.93 2.93 129.4 -1.90 -0.61 18.7 85 11 6 9 5 0 5 0  DG 1 N DA 1 R DC 5 R DC 6 R DA 9 T DA 17 T DC 18 T DC 21 T DT 22 T DG 23 T DG 24 T DT 25 T 18 1.36 1.34 153.6 -1.26 -0.41 19.5 82 8 18 7 8 3 6 0   19 3.72 3.91 165.5 -1.46 -0.45 21.2 88 20 11 13 11 1 2 0  DA 9 T DA 10 T 20 1.37 1.50 164.7 -1.41 -0.43 22.1 83 11 19 6 9 2 3 0   21 1.96 3.19 174.0 -1.90 -0.47 23.4 87 15 13 11 9 1 3 0  DG 1 N DA 9 T 22 2.08 2.11 175.5 -1.99 -0.51 21.2 83 14 13 14 5 4 5 0  MG 2002 A DA 1 R DC 5 R DC 6 R DC 10 R DC 18 T DG 19 T DC 20 T DC 21 T DT 22 T DG 23 T DG 24 T DT 25 T G2P 3000 T 23 1.97 3.28 200.4 -1.78 -0.48 23.1 86 14 13 8 8 1 2 0  DG 1 N DG 7 N DC 5 R DC 6 R DT 12 T DA 13 T DC 14 T DA 17 T DC 18 T 24 2.29 2.32 243.5 -2.23 -0.48 25.5 81 26 15 13 7 5 3 0  DA 1 R DT 25 T DT 27 T DT 28 T 25 1.91 3.13 265.2 -2.17 -0.55 23.8 86 25 21 20 7 3 3 0  MG 2002 A DG 1 N DC 6 R DC 10 R DA 17 T DC 18 T DG 19 T DC 20 T G2P 3000 T 26 1.74 2.55 266.2 -1.42 -0.41 20.1 84 16 27 17 20 4 6 0  DA 9 T DA 10 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.