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PDBsum entry 2nmv

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Top Page protein dna_rna ligands Protein-protein interface(s) pores links
Pore analysis for: 2nmv calculated with MOLE 2.0 PDB id
2nmv
Pores calculated on whole structure Pores calculated excluding ligands

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8 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.32 1.34 29.1 -0.41 -0.10 6.5 82 1 2 4 2 4 0 0  DT 1 D DT 2 D DT 3 D DT 4 D DT 5 D
2 1.32 1.33 29.6 -0.85 -0.52 6.7 87 3 1 3 0 2 0 0  DT 1 D DT 2 D DT 3 D DT 4 D DT 5 D
3 2.36 6.07 30.1 -2.98 -0.51 40.1 74 8 4 1 2 2 0 0  DT 1 D DT 2 D FLU 600 D
4 1.16 1.31 35.2 -1.01 -0.04 18.5 79 4 2 4 6 4 0 0  DT 5 D
5 1.34 1.33 35.5 -0.43 -0.33 5.5 83 1 2 3 5 3 0 0  DT 1 D DT 2 D DT 3 D DT 4 D DT 5 D
6 1.29 1.65 39.4 -2.39 -0.38 33.5 72 7 2 1 1 2 0 0  
7 1.16 1.31 44.3 -1.02 -0.43 12.5 84 5 2 4 4 2 0 0  DT 4 D DT 5 D
8 3.51 3.51 53.4 -1.08 -0.17 17.7 79 3 4 4 1 2 0 0  DT 1 D DT 2 D NML 103 D FLU 600 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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