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PDBsum entry 2msb
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Contents |
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* Residue conservation analysis
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Nature
360:127-134
(1992)
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PubMed id:
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Structure of a C-type mannose-binding protein complexed with an oligosaccharide.
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W.I.Weis,
K.Drickamer,
W.A.Hendrickson.
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ABSTRACT
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C-type (Ca(2+)-dependent) animal lectins such as mannose-binding proteins
mediate many cell-surface carbohydrate-recognition events. The crystal structure
at 1.7 A resolution of the carbohydrate-recognition domain of rat
mannose-binding protein complexed with an oligomannose
asparaginyl-oligosaccharide reveals that Ca2+ forms coordination bonds with the
carbohydrate ligand. Carbohydrate specificity is determined by a network of
coordination and hydrogen bonds that stabilizes the ternary complex of protein,
Ca2+ and sugar. Two branches of the oligosaccharide crosslink neighbouring
carbohydrate-recognition domains in the crystal, enabling multivalent binding to
a single oligosaccharide chain to be visualized directly.
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Literature references that cite this PDB file's key reference
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PubMed id
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Reference
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R.Ilyas,
R.Wallis,
E.J.Soilleux,
P.Townsend,
D.Zehnder,
B.K.Tan,
R.B.Sim,
H.Lehnert,
H.S.Randeva,
and
D.A.Mitchell
(2011).
High glucose disrupts oligosaccharide recognition function via competitive inhibition: a potential mechanism for immune dysregulation in diabetes mellitus.
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Immunobiology,
216,
126-131.
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H.Feinberg,
A.S.Powlesland,
M.E.Taylor,
and
W.I.Weis
(2010).
Trimeric structure of langerin.
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J Biol Chem,
285,
13285-13293.
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PDB code:
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K.Duus,
N.M.Thielens,
M.Lacroix,
P.Tacnet,
P.Frachet,
U.Holmskov,
and
G.Houen
(2010).
CD91 interacts with mannan-binding lectin (MBL) through the MBL-associated serine protease-binding site.
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FEBS J,
277,
4956-4964.
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P.J.Coombs,
R.Harrison,
S.Pemberton,
A.Quintero-Martinez,
S.Parry,
S.M.Haslam,
A.Dell,
M.E.Taylor,
and
K.Drickamer
(2010).
Identification of novel contributions to high-affinity glycoprotein-receptor interactions using engineered ligands.
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J Mol Biol,
396,
685-696.
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P.Mazumder,
and
C.Mukhopadhyay
(2010).
Molecular modeling and NMR studies of benzyl substituted mannosyl trisaccharide binding to two mannose-specific lectins: Allium sativam agglutinin I and Concanavalin A.
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Biopolymers,
93,
952-967.
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R.E.Lehotzky,
C.L.Partch,
S.Mukherjee,
H.L.Cash,
W.E.Goldman,
K.H.Gardner,
and
L.V.Hooper
(2010).
Molecular basis for peptidoglycan recognition by a bactericidal lectin.
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Proc Natl Acad Sci U S A,
107,
7722-7727.
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S.Jin,
Y.Cheng,
S.Reid,
M.Li,
and
B.Wang
(2010).
Carbohydrate recognition by boronolectins, small molecules, and lectins.
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Med Res Rev,
30,
171-257.
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A.K.Schnitger,
H.Yassine,
F.C.Kafatos,
and
M.A.Osta
(2009).
Two C-type lectins cooperate to defend Anopheles gambiae against Gram-negative bacteria.
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J Biol Chem,
284,
17616-17624.
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A.K.Shrive,
C.Martin,
I.Burns,
J.M.Paterson,
J.D.Martin,
J.P.Townsend,
P.Waters,
H.W.Clark,
U.Kishore,
K.B.Reid,
and
T.J.Greenhough
(2009).
Structural characterisation of ligand-binding determinants in human lung surfactant protein D: influence of Asp325.
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J Mol Biol,
394,
776-788.
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PDB codes:
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D.M.Zuo,
L.Y.Zhang,
X.Lu,
Y.Liu,
and
Z.L.Chen
(2009).
Protective role of mouse MBL-C on intestinal mucosa during Shigella flexneri invasion.
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Int Immunol,
21,
1125-1134.
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M.E.Taylor,
and
K.Drickamer
(2009).
Structural insights into what glycan arrays tell us about how glycan-binding proteins interact with their ligands.
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Glycobiology,
19,
1155-1162.
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W.K.Ip,
K.Takahashi,
R.A.Ezekowitz,
and
L.M.Stuart
(2009).
Mannose-binding lectin and innate immunity.
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Immunol Rev,
230,
9.
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Y.J.Ma,
A.Doni,
T.Hummelshøj,
C.Honoré,
A.Bastone,
A.Mantovani,
N.M.Thielens,
and
P.Garred
(2009).
Synergy between ficolin-2 and pentraxin 3 boosts innate immune recognition and complement deposition.
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J Biol Chem,
284,
28263-28275.
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A.Bugarcic,
K.Hitchens,
A.G.Beckhouse,
C.A.Wells,
R.B.Ashman,
and
H.Blanchard
(2008).
Human and mouse macrophage-inducible C-type lectin (Mincle) bind Candida albicans.
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Glycobiology,
18,
679-685.
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A.Koneti,
M.J.Linke,
E.Brummer,
and
D.A.Stevens
(2008).
Evasion of innate immune responses: evidence for mannose binding lectin inhibition of tumor necrosis factor alpha production by macrophages in response to Blastomyces dermatitidis.
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Infect Immun,
76,
994.
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D.A.Stevens
(2008).
A possible mechanism for synergy between antifungal therapy and immune defenses.
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J Infect Dis,
198,
159-162.
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J.Diao,
and
E.Tajkhorshid
(2008).
Indirect role of Ca2+ in the assembly of extracellular matrix proteins.
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Biophys J,
95,
120-127.
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K.Zhuo,
Y.Wang,
Y.Zhao,
Q.Liu,
and
J.Wang
(2008).
Interactions of calcium nitrate with pyranosides in water: a 13C NMR study.
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Spectrochim Acta A Mol Biomol Spectrosc,
71,
100-104.
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L.A.Graham,
S.C.Lougheed,
K.V.Ewart,
and
P.L.Davies
(2008).
Lateral transfer of a lectin-like antifreeze protein gene in fishes.
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PLoS ONE,
3,
e2616.
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L.Yang,
H.Sun,
S.Weng,
K.Zhao,
L.Zhang,
G.Zhao,
Y.Wang,
Y.Xu,
X.Lu,
C.Zhang,
J.Wu,
and
C.Jia'er
(2008).
Terahertz absorption spectra of some saccharides and their metal complexes.
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Spectrochim Acta A Mol Biomol Spectrosc,
69,
160-166.
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M.K.Pangburn,
V.P.Ferreira,
and
C.Cortes
(2008).
Discrimination between host and pathogens by the complement system.
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Vaccine,
26,
I15-I21.
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R.Pagh,
K.Duus,
I.Laursen,
P.R.Hansen,
J.Mangor,
N.Thielens,
G.J.Arlaud,
L.Kongerslev,
P.Højrup,
and
G.Houen
(2008).
The chaperone and potential mannan-binding lectin (MBL) co-receptor calreticulin interacts with MBL through the binding site for MBL-associated serine proteases.
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FEBS J,
275,
515-526.
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Y.Aoyagi,
E.E.Adderson,
C.E.Rubens,
J.F.Bohnsack,
J.G.Min,
M.Matsushita,
T.Fujita,
Y.Okuwaki,
and
S.Takahashi
(2008).
L-ficolin/mannose-binding lectin-associated serine protease complexes bind to group B streptococci primarily through N-acetylneuraminic acid of capsular polysaccharide and activate the complement pathway.
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Infect Immun,
76,
179-188.
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A.Ragas,
L.Roussel,
G.Puzo,
and
M.Rivière
(2007).
The Mycobacterium tuberculosis cell-surface glycoprotein apa as a potential adhesin to colonize target cells via the innate immune system pulmonary C-type lectin surfactant protein A.
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J Biol Chem,
282,
5133-5142.
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M.Tanio,
S.Kondo,
S.Sugio,
and
T.Kohno
(2007).
Trivalent recognition unit of innate immunity system: crystal structure of trimeric human M-ficolin fibrinogen-like domain.
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J Biol Chem,
282,
3889-3895.
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PDB code:
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R.Wallis
(2007).
Interactions between mannose-binding lectin and MASPs during complement activation by the lectin pathway.
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Immunobiology,
212,
289-299.
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S.Thiel,
R.Steffensen,
I.J.Christensen,
W.K.Ip,
Y.L.Lau,
I.J.Reason,
H.Eiberg,
M.Gadjeva,
M.Ruseva,
and
J.C.Jensenius
(2007).
Deficiency of mannan-binding lectin associated serine protease-2 due to missense polymorphisms.
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Genes Immun,
8,
154-163.
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T.Hatakeyama,
H.Unno,
Y.Kouzuma,
T.Uchida,
S.Eto,
H.Hidemura,
N.Kato,
M.Yonekura,
and
M.Kusunoki
(2007).
C-type lectin-like carbohydrate recognition of the hemolytic lectin CEL-III containing ricin-type -trefoil folds.
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J Biol Chem,
282,
37826-37835.
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PDB codes:
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T.Ikeda,
M.Boero,
and
K.Terakura
(2007).
Hydration properties of magnesium and calcium ions from constrained first principles molecular dynamics.
|
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J Chem Phys,
127,
074503.
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V.Garlatti,
N.Belloy,
L.Martin,
M.Lacroix,
M.Matsushita,
Y.Endo,
T.Fujita,
J.C.Fontecilla-Camps,
G.J.Arlaud,
N.M.Thielens,
and
C.Gaboriaud
(2007).
Structural insights into the innate immune recognition specificities of L- and H-ficolins.
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EMBO J,
26,
623-633.
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PDB codes:
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A.Bagaria,
K.Surendranath,
U.A.Ramagopal,
S.Ramakumar,
and
A.A.Karande
(2006).
Structure-function analysis and insights into the reduced toxicity of Abrus precatorius agglutinin I in relation to abrin.
|
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J Biol Chem,
281,
34465-34474.
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PDB codes:
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B.A.Wurzburg,
S.S.Tarchevskaya,
and
T.S.Jardetzky
(2006).
Structural changes in the lectin domain of CD23, the low-affinity IgE receptor, upon calcium binding.
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Structure,
14,
1049-1058.
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PDB codes:
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E.Crouch,
B.McDonald,
K.Smith,
T.Cafarella,
B.Seaton,
and
J.Head
(2006).
Contributions of phenylalanine 335 to ligand recognition by human surfactant protein D: ring interactions with SP-D ligands.
|
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J Biol Chem,
281,
18008-18014.
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PDB codes:
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E.M.Ward,
N.S.Stambach,
K.Drickamer,
and
M.E.Taylor
(2006).
Polymorphisms in human langerin affect stability and sugar binding activity.
|
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J Biol Chem,
281,
15450-15456.
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E.W.Odom,
and
G.R.Vasta
(2006).
Characterization of a binary tandem domain F-type lectin from striped bass (Morone saxatilis).
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J Biol Chem,
281,
1698-1713.
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H.Deng,
G.Chen,
W.Yang,
and
J.J.Yang
(2006).
Predicting calcium-binding sites in proteins - a graph theory and geometry approach.
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Proteins,
64,
34-42.
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H.L.Cash,
C.V.Whitham,
and
L.V.Hooper
(2006).
Refolding, purification, and characterization of human and murine RegIII proteins expressed in Escherichia coli.
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Protein Expr Purif,
48,
151-159.
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H.R.Juul-Madsen,
T.Krogh-Meibom,
M.Henryon,
N.Palaniyar,
P.M.Heegaard,
S.Purup,
A.C.Willis,
I.Tornøe,
K.L.Ingvartsen,
S.Hansen,
and
U.Holmskov
(2006).
Identification and characterization of porcine mannan-binding lectin A (pMBL-A), and determination of serum concentration heritability.
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Immunogenetics,
58,
129-137.
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J.H.Brown
(2006).
Breaking symmetry in protein dimers: designs and functions.
|
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Protein Sci,
15,
1.
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J.N.Arnold,
R.Wallis,
A.C.Willis,
D.J.Harvey,
L.Royle,
R.A.Dwek,
P.M.Rudd,
and
R.B.Sim
(2006).
Interaction of mannan binding lectin with alpha2 macroglobulin via exposed oligomannose glycans: a conserved feature of the thiol ester protein family?
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J Biol Chem,
281,
6955-6963.
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M.Patra,
S.Majumder,
and
C.Mandal
(2006).
Structural studies on mannose-selective glycoprotein receptors using molecular modeling techniques.
|
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Glycoconj J,
23,
241-249.
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O.Alptürk,
O.Rusin,
S.O.Fakayode,
W.Wang,
J.O.Escobedo,
I.M.Warner,
W.E.Crowe,
V.Král,
J.M.Pruet,
and
R.M.Strongin
(2006).
Lanthanide complexes as fluorescent indicators for neutral sugars and cancer biomarkers.
|
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Proc Natl Acad Sci U S A,
103,
9756-9760.
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R.M.Dommett,
N.Klein,
and
M.W.Turner
(2006).
Mannose-binding lectin in innate immunity: past, present and future.
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Tissue Antigens,
68,
193-209.
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W.Yang,
J.Y.Lee,
and
M.Nowotny
(2006).
Making and breaking nucleic acids: two-Mg2+-ion catalysis and substrate specificity.
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Mol Cell,
22,
5.
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A.Krarup,
U.B.Sørensen,
M.Matsushita,
J.C.Jensenius,
and
S.Thiel
(2005).
Effect of capsulation of opportunistic pathogenic bacteria on binding of the pattern recognition molecules mannan-binding lectin, L-ficolin, and H-ficolin.
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Infect Immun,
73,
1052-1060.
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A.N.Zelensky,
and
J.E.Gready
(2005).
The C-type lectin-like domain superfamily.
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FEBS J,
272,
6179-6217.
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I.Ohki,
T.Ishigaki,
T.Oyama,
S.Matsunaga,
Q.Xie,
M.Ohnishi-Kameyama,
T.Murata,
D.Tsuchiya,
S.Machida,
K.Morikawa,
and
S.Tate
(2005).
Crystal structure of human lectin-like, oxidized low-density lipoprotein receptor 1 ligand binding domain and its ligand recognition mode to OxLDL.
|
| |
Structure,
13,
905-917.
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PDB codes:
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J.N.Arnold,
M.R.Wormald,
D.M.Suter,
C.M.Radcliffe,
D.J.Harvey,
R.A.Dwek,
P.M.Rudd,
and
R.B.Sim
(2005).
Human serum IgM glycosylation: identification of glycoforms that can bind to mannan-binding lectin.
|
| |
J Biol Chem,
280,
29080-29087.
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M.Møller-Kristensen,
W.Wang,
M.Ruseva,
S.Thiel,
S.Nielsen,
K.Takahashi,
L.Shi,
A.Ezekowitz,
J.C.Jensenius,
and
M.Gadjeva
(2005).
Mannan-binding lectin recognizes structures on ischaemic reperfused mouse kidneys and is implicated in tissue injury.
|
| |
Scand J Immunol,
61,
426-434.
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P.H.Jensen,
D.Weilguny,
F.Matthiesen,
K.A.McGuire,
L.Shi,
and
P.Højrup
(2005).
Characterization of the oligomer structure of recombinant human mannan-binding lectin.
|
| |
J Biol Chem,
280,
11043-11051.
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R.Sørensen,
S.Thiel,
and
J.C.Jensenius
(2005).
Mannan-binding-lectin-associated serine proteases, characteristics and disease associations.
|
| |
Springer Semin Immunopathol,
27,
299-319.
|
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S.A.McMahon,
J.L.Miller,
J.A.Lawton,
D.E.Kerkow,
A.Hodes,
M.A.Marti-Renom,
S.Doulatov,
E.Narayanan,
A.Sali,
J.F.Miller,
and
P.Ghosh
(2005).
The C-type lectin fold as an evolutionary solution for massive sequence variation.
|
| |
Nat Struct Mol Biol,
12,
886-892.
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PDB codes:
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T.Ishigaki,
I.Ohki,
T.Oyama,
S.Machida,
K.Morikawa,
and
S.Tate
(2005).
Purification, crystallization and preliminary X-ray analysis of the ligand-binding domain of human lectin-like oxidized low-density lipoprotein receptor 1 (LOX-1).
|
| |
Acta Crystallogr Sect F Struct Biol Cryst Commun,
61,
524-527.
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A.Lundell,
A.I.Olin,
M.Mörgelin,
S.al-Karadaghi,
A.Aspberg,
and
D.T.Logan
(2004).
Structural basis for interactions between tenascins and lectican C-type lectin domains: evidence for a crosslinking role for tenascins.
|
| |
Structure,
12,
1495-1506.
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PDB code:
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C.T.Gange,
J.M.Quinn,
H.Zhou,
V.Kartsogiannis,
M.T.Gillespie,
and
K.W.Ng
(2004).
Characterization of sugar binding by osteoclast inhibitory lectin.
|
| |
J Biol Chem,
279,
29043-29049.
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E.I.Park,
and
J.U.Baenziger
(2004).
Closely related mammals have distinct asialoglycoprotein receptor carbohydrate specificities.
|
| |
J Biol Chem,
279,
40954-40959.
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E.Riedl,
Y.Tada,
and
M.C.Udey
(2004).
Identification and characterization of an alternatively spliced isoform of mouse Langerin/CD207.
|
| |
J Invest Dermatol,
123,
78-86.
|
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H.Sugawara,
M.Kusunoki,
G.Kurisu,
T.Fujimoto,
H.Aoyagi,
and
T.Hatakeyama
(2004).
Characteristic recognition of N-acetylgalactosamine by an invertebrate C-type Lectin, CEL-I, revealed by X-ray crystallographic analysis.
|
| |
J Biol Chem,
279,
45219-45225.
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PDB codes:
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J.K.van de Wetering,
L.M.van Golde,
and
J.J.Batenburg
(2004).
Collectins: players of the innate immune system.
|
| |
Eur J Biochem,
271,
1229-1249.
|
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K.H.Soanes,
K.Figuereido,
R.C.Richards,
N.R.Mattatall,
and
K.V.Ewart
(2004).
Sequence and expression of C-type lectin receptors in Atlantic salmon (Salmo salar).
|
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Immunogenetics,
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only a partial list as not all journals are covered by
either method. However, we are continually building up the citation data
so more and more references will be included with time.
Where a reference describes a PDB structure, the PDB
code is
shown on the right.
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