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PDBsum entry 2mkn

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Top Page protein dna_rna metals pores links
Pore analysis for: 2mkn calculated with MOLE 2.0 PDB id
2mkn
Pores calculated on whole structure Pores calculated excluding ligands

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1 pore, coloured by radius 1 pore, coloured by radius 1 pore, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.00 3.01 41.2 -1.11 -0.72 12.8 72 0 0 0 0 0 0 0  G 1 B C 2 B C 3 B G 4 B U 5 B G 6 B G 7 B U 8 B C
9 B U 10 B G 11 B DG 23 C DC 24 C DC 25 C DA 26 C
DC 27 C DC 28 C DA 29 C DG 30 C DA 31 C DC 32 C
DC 33 C DA 34 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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