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PDBsum entry 2mkn
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Tunnel analysis for: 2mkn calculated with  MOLE 2.0
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PDB id
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2mkn
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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5 tunnels,
coloured by tunnel radius |
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5 tunnels,
coloured by
tunnel radius
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5 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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3.62 |
3.62 |
17.1 |
-0.40 |
-0.80 |
3.4 |
0 |
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0 |
0 |
0 |
0 |
0 |
0 |
0 |
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G 12 B U 13 B G 14 B DC 21 C DG 22 C DG 23 C DC
24 C DC 25 C
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2 |
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2.02 |
2.02 |
20.0 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
U 10 B G 11 B DG 23 C DC 24 C DC 25 C
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3 |
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3.33 |
3.33 |
26.8 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 12 B U 13 B G 14 B G 15 B C 16 B DC 20 C DC 21
C DG 22 C DG 23 C DC 24 C DC 25 C
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4 |
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2.54 |
2.54 |
35.3 |
-1.54 |
-0.67 |
18.4 |
72 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
C 2 B C 3 B G 4 B U 5 B G 7 B U 8 B C 9 B U 10 B
G 11 B DC 24 C DC 25 C DA 26 C DC 27 C DC 28 C DA
29 C DG 30 C DA 31 C
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5 |
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2.66 |
2.66 |
37.0 |
-0.74 |
-0.68 |
8.6 |
99 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
G 6 B G 7 B U 8 B C 9 B U 10 B DC 24 C DC 25 C DA
26 C
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program