PDBsum entry 2l5y Go to PDB code:  Tunnel analysis for: 2l5y calculated with MOLE 2.0 PDB id 2l5y Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.57 1.57 15.2 1.07 -0.01 4.8 89 1 1 0 8 0 0 0   2 1.28 1.66 15.4 2.27 0.69 3.1 85 1 1 1 7 1 0 0   3 1.39 1.39 15.5 -1.34 0.31 21.1 70 3 1 1 2 2 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.