PDBsum entry 2kqy Go to PDB code:  Tunnel analysis for: 2kqy calculated with MOLE 2.0 PDB id 2kqy Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.14 1.38 18.2 2.09 0.53 1.2 68 0 0 1 3 4 0 1   2 1.32 1.87 18.3 2.31 0.82 1.5 68 1 0 1 5 4 0 0   3 1.18 1.39 19.4 2.70 0.95 0.8 75 0 0 1 8 4 0 0   4 1.14 1.39 25.7 1.47 0.38 1.4 77 0 0 2 5 3 0 1   5 1.13 1.38 31.7 1.06 0.03 2.8 84 1 0 4 5 4 0 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.