PDBsum entry 2kn6

Apoptosis

PDB id: 2kn6

Contents

Protein chain

195 a.a. *

* Residue conservation analysis

PDB id:

2kn6

Name:

Apoptosis

Title:

Structure of full-length human asc (apoptosis-associated speck-like protein containing a card)

Structure:

Apoptosis-associated speck-like protein containing a card. Chain: a. Synonym: hasc, pyd and card domain-containing protein, target of methylation-induced silencing 1, caspase recruitment domain- containing protein 5. Engineered: yes

Source:

Homo sapiens. Human. Organism_taxid: 9606. Gene: asc, card5, pycard, tms1. Expressed in: escherichia coli. Expression_system_taxid: 562.

NMR struc:

20 models

Authors:

E.De Alba

Key ref:

E.de Alba (2009). Structure and interdomain dynamics of apoptosis-associated speck-like protein containing a CARD (ASC). J Biol Chem, 284, 32932-32941. PubMed id: 19759015

Date:

16-Aug-09 Release date: 15-Sep-09

Protein chain

Q9ULZ3  (ASC_HUMAN) -  Apoptosis-associated speck-like protein containing a CARD from Homo sapiens

Seq: 195 a.a.

Struc: 195 a.a.

Enzyme reactions

• Enzyme class: E.C.?

J Biol Chem 284:32932-32941 (2009)

PubMed id: 19759015

Structure and interdomain dynamics of apoptosis-associated speck-like protein containing a CARD (ASC).

E.de Alba.

ABSTRACT

The human protein ASC is a key mediator in apoptosis and inflammation. Through its two death domains (pyrin and CARD) ASC interacts with cell death executioners, acts as an essential adapter for inflammasome integrity, and oligomerizes into functional supramolecular assemblies. However, these functions are not understood at the structural-dynamic level. This study reports the solution structure and interdomain dynamics of full-length ASC. The pyrin and CARD domains are structurally independent six-helix bundle motifs connected by a 23-residue linker. The CARD structure reveals two distinctive characteristics; helix 1 is not fragmented as in all other known CARDs, and its electrostatic surface shows a uniform distribution of positive and negative charges, whereas these are commonly separated into two areas in other death domains. The linker adopts residual structure resulting in a back-to-back orientation of the domains, which avoids steric interference of each domain with the binding site of the other. NMR relaxation experiments show that the linker is flexible despite the residual structure. This flexibility could help expand the relative volume occupied by each domain, thus increasing the capture radius for effectors. Based on the ASC structure, a tentative model is proposed to illustrate how ASC oligomerizes via CARD and pyrin homophilic interactions. Moreover, ASC oligomers have been analyzed by atomic force microscopy, showing a predominant species of disk-like particles of approximately 12-nm diameter and approximately 1-nm height. Taken together, these results provide structural insight into the behavior of ASC as an adapter molecule.