PDBsum entry 2k6d Go to PDB code:  Tunnel analysis for: 2k6d calculated with MOLE 2.0 PDB id 2k6d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.25 1.25 27.6 0.05 -0.15 6.9 75 1 1 1 2 3 1 0   2 1.25 1.25 40.2 0.61 0.26 7.3 70 2 2 1 4 4 1 1   3 1.24 2.32 25.9 2.06 0.47 2.7 86 1 0 1 8 0 0 0   4 1.32 2.31 26.2 2.04 0.46 2.8 86 1 0 1 8 0 0 0   5 1.12 1.48 36.9 0.37 0.21 17.7 80 2 2 1 8 0 0 1   6 1.12 1.49 37.2 0.75 0.33 16.0 80 2 2 1 8 0 0 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.