spacer
spacer

PDBsum entry 2jnf

Go to PDB code: 
Top Page protein links
Metal binding protein PDB id
2jnf
Contents
Protein chain
158 a.a.

References listed in PDB file
Key reference
Title The structure of lethocerus troponin c: insights into the mechanism of stretch activation in muscles.
Authors G.De nicola, C.Burkart, F.Qiu, B.Agianian, S.Labeit, S.Martin, B.Bullard, A.Pastore.
Ref. Structure, 2007, 15, 813-824. [DOI no: 10.1016/j.str.2007.05.007]
PubMed id 17637342
Abstract
To gain a molecular description of how muscles can be activated by mechanical stretch, we have solved the structure of the calcium-loaded F1 isoform of troponin C (TnC) from Lethocerus and characterized its interactions with troponin I (TnI). We show that the presence of only one calcium cation in the fourth EF hand motif is sufficient to induce an open conformation in the C-terminal lobe of F1 TnC, in contrast with what is observed in vertebrate muscle. This lobe interacts in a calcium-independent way both with the N terminus of TnI and, with lower affinity, with a region of TnI equivalent to the switch and inhibitory peptides of vertebrate muscles. Using both synthetic peptides and recombinant proteins, we show that the N lobe of F1 TnC is not engaged in interactions with TnI, excluding a regulatory role of this domain. These findings provide insights into mechanically stimulated muscle contraction.
Figure 2.
Figure 2. Conformational Status of the Two Lobes of F1 TnC
(A) Structural comparison of the two lobes of F1 TnC with the PDB picks up as the highest hits the apo N lobe of skeletal TnC, which is in closed conformation (PDB code: 1skt; Tsuda et al., 1999) and the holo C lobe of cardiac TnC in complex with the corresponding N terminus of TnI (PDB code: 1ozs; Lindhout and Sykes, 2003).
(B) Comparison of the HSQC spectra of apo (blue) and holo (red) Lethocerus F1 TnC. The spectra were recorded at 25°C on a 600 MHz spectrometer. The shift upon Ca^2+ addition of the resonance of V144 is indicated.
Figure 6.
Figure 6. Modeling of the Complex
(A) Structural superposition of the four available structures of TnC complexes (PDB codes: 1a2x, 1j1d, 1ytz, and 1yv0) with the N terminus of TnI. The structures were superposed on the C lobe of TnC. The comparison shows that, despite the differences in the relative orientation of the N lobe, TnI interacts in the same groove and adopts the same relative orientation to the C lobe.
(B) Comparison of the network of interactions formed between the C lobe of TnC and TnI in the cardiac complex (Takeda et al., 2003) (left panel) and in a homology model built (right panel) using the cardiac structure (PDB code: 1j1d) as a template. The side chains of the key residues involved are displayed explicitly and labeled in red and green according to whether they correspond to TnI and TnC, respectively, for the cardiac structure. Similarly, they are colored in red and blue according to whether they correspond to Lethocerus TnH and TnC, respectively.
The above figures are reprinted by permission from Cell Press: Structure (2007, 15, 813-824) copyright 2007.
PROCHECK
Go to PROCHECK summary
 Headers

 

spacer

spacer