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PDBsum entry 2jkk

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protein ligands links
Transferase PDB id
2jkk

 

 

 

 

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JSmol PyMol  
Contents
Protein chain
258 a.a. *
Ligands
SO4
BI9
Waters ×139
* Residue conservation analysis
PDB id:
2jkk
Name: Transferase
Title: Focal adhesion kinase catalytic domain in complex with bis-anilino pyrimidine inhibitor
Structure: Focal adhesion kinase 1. Chain: a. Fragment: kinase domain, residues 411-686. Synonym: pp125fak. Engineered: yes
Source: Gallus gallus. Chicken. Organism_taxid: 9031. Expressed in: trichoplusia ni. Expression_system_taxid: 7111. Expression_system_cell_line: high five.
Resolution:
2.00Å     R-factor:   0.182     R-free:   0.236
Authors: D.Lietha,M.J.Eck
Key ref: D.Lietha and M.J.Eck (2008). Crystal structures of the FAK kinase in complex with TAE226 and related bis-anilino pyrimidine inhibitors reveal a helical DFG conformation. Plos One, 3, e3800. PubMed id: 19030106
Date:
28-Aug-08     Release date:   09-Sep-08    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
Q00944  (FAK1_CHICK) -  Focal adhesion kinase 1 from Gallus gallus
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1053 a.a.
258 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.2.7.10.2  - non-specific protein-tyrosine kinase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H+
L-tyrosyl-[protein]
+ ATP
= O-phospho-L-tyrosyl-[protein]
+ ADP
+ H(+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    Added reference    
 
 
Plos One 3:e3800 (2008)
PubMed id: 19030106  
 
 
Crystal structures of the FAK kinase in complex with TAE226 and related bis-anilino pyrimidine inhibitors reveal a helical DFG conformation.
D.Lietha, M.J.Eck.
 
  ABSTRACT  
 
Focal Adhesion Kinase (FAK) is a non-receptor tyrosine kinase required for cell migration, proliferation and survival. FAK overexpression has been documented in diverse human cancers and is associated with a poor clinical outcome. Recently, a novel bis-anilino pyrimidine inhibitor, TAE226, was reported to efficiently inhibit FAK signaling, arrest tumor growth and invasion and prolong the life of mice with glioma or ovarian tumor implants. Here we describe the crystal structures of the FAK kinase bound to TAE226 and three related bis-anilino pyrimidine compounds. TAE226 induces a conformation of the N-terminal portion of the kinase activation loop that is only observed in FAK, but is distinct from the conformation in both the active and inactive states of the kinase. This conformation appears to require a glycine immediately N-terminal to the "DFG motif", which adopts a helical conformation stabilized by interactions with TAE226. The presence of a glycine residue in this position contributes to the specificity of TAE226 and related compounds for FAK. Our work highlights the fact that kinases can access conformational space that is not necessarily utilized for their native catalytic regulation, and that such conformations can explain and be exploited for inhibitor specificity.
 

Literature references that cite this PDB file's key reference

  PubMed id Reference
20001213 C.A.Lipinski, and J.C.Loftus (2010).
Targeting Pyk2 for therapeutic intervention.
  Expert Opin Ther Targets, 14, 95.  
19595465 A.Fernández, and S.Sessel (2009).
Selective antagonism of anticancer drugs for side-effect removal.
  Trends Pharmacol Sci, 30, 403-410.  
20033049 W.Zhou, D.Ercan, L.Chen, C.H.Yun, D.Li, M.Capelletti, A.B.Cortot, L.Chirieac, R.E.Iacob, R.Padera, J.R.Engen, K.K.Wong, M.J.Eck, N.S.Gray, and P.A.Jänne (2009).
Novel mutant-selective EGFR kinase inhibitors against EGFR T790M.
  Nature, 462, 1070-1074.
PDB code: 3ika
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB code is shown on the right.

 

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