PDBsum entry 2jjs Go to PDB code:  Tunnel analysis for: 2jjs calculated with MOLE 2.0 PDB id 2jjs Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   10 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.42 2.57 15.9 -0.78 -0.45 9.3 86 1 1 2 1 1 0 0  PCA 1 D 2 2.43 2.59 17.0 -0.24 -0.26 8.7 85 2 1 2 2 1 1 0  NAG 1120 B PCA 1 D 3 1.72 1.72 29.0 -0.86 -0.38 16.9 83 3 2 2 3 1 1 0  PCA 1 D 4 2.28 3.49 31.8 -1.16 -0.50 12.6 86 3 1 3 1 1 0 0  PCA 1 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.