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PDBsum entry 2jiz

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 2jiz calculated with MOLE 2.0 PDB id
2jiz
Pores calculated on whole structure Pores calculated excluding ligands

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24 pores, coloured by radius 24 pores, coloured by radius 24 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.18 2.62 35.7 -1.38 -0.19 23.0 73 3 5 0 5 3 1 0  
2 4.37 5.48 35.7 -2.61 -0.49 28.7 84 5 4 5 3 1 0 0  
3 2.04 2.36 35.8 -2.14 -0.76 28.1 84 6 4 1 1 0 0 0  
4 1.45 1.58 42.3 -1.49 -0.38 20.8 80 4 3 1 4 1 1 0  GOL 1513 A
5 2.67 2.72 49.3 -1.39 -0.40 20.2 75 7 5 1 3 2 1 0  
6 2.04 2.36 56.4 -1.18 -0.34 19.3 79 5 6 2 4 2 1 0  
7 2.32 3.73 65.8 -1.88 -0.44 18.1 84 6 4 6 2 2 1 0  
8 1.49 1.78 77.4 -0.61 -0.22 13.4 91 5 3 5 13 0 3 0  STL 1273 G
9 1.45 1.73 82.6 -1.01 -0.39 17.6 87 5 8 5 9 1 3 0  STL 1273 N
10 2.82 4.12 89.8 -2.03 -0.36 27.1 84 8 12 7 9 2 1 0  
11 1.24 1.55 91.9 -1.29 -0.30 22.3 76 8 10 0 8 4 2 0  
12 1.46 2.88 111.9 -0.56 -0.17 19.3 82 4 6 2 12 1 1 0  
13 2.55 2.54 138.2 -1.43 -0.37 21.6 81 11 9 6 12 1 0 0  
14 1.75 3.69 143.7 -1.92 -0.40 22.9 84 14 16 14 10 3 3 0  
15 1.62 1.78 150.7 -1.51 -0.39 22.7 84 12 18 10 17 3 5 0  STL 1273 G
16 1.46 1.59 148.1 -1.56 -0.49 21.4 85 11 13 11 12 1 5 0  STL 1273 G
17 1.52 2.89 151.7 -1.30 -0.37 22.4 82 10 9 8 17 3 0 0  
18 1.22 3.22 158.8 -0.49 -0.22 16.6 85 8 10 4 24 2 3 0  STL 1273 N
19 1.74 2.47 247.7 -1.97 -0.60 26.4 84 20 23 14 12 4 2 0  
20 1.58 2.59 249.7 -2.07 -0.57 25.5 83 19 21 16 10 4 4 0  
21 1.24 3.21 260.6 -1.13 -0.39 19.6 83 12 15 10 18 3 3 0  
22 1.51 2.47 264.4 -1.49 -0.49 20.4 82 12 14 12 15 3 4 0  
23 1.89 2.87 277.2 -1.96 -0.55 25.4 83 20 28 17 16 4 4 0  
24 1.15 1.94 292.5 -1.21 -0.43 21.1 82 15 21 9 20 4 4 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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