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PDBsum entry 2jdq
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Tunnel analysis for: 2jdq calculated with  MOLE 2.0
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PDB id
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2jdq
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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10 tunnels,
coloured by tunnel radius |
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10 tunnels,
coloured by
tunnel radius
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10 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.16 |
1.75 |
17.2 |
-0.50 |
0.00 |
13.2 |
68 |
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3 |
1 |
0 |
2 |
2 |
2 |
0 |
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2 |
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1.16 |
1.75 |
20.2 |
-0.35 |
-0.07 |
8.8 |
69 |
2 |
0 |
0 |
3 |
1 |
3 |
0 |
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3 |
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1.22 |
1.34 |
20.6 |
-0.07 |
0.13 |
14.9 |
77 |
3 |
0 |
0 |
7 |
1 |
0 |
0 |
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4 |
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1.20 |
1.33 |
33.3 |
-0.39 |
-0.04 |
15.7 |
77 |
3 |
3 |
2 |
9 |
2 |
0 |
0 |
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5 |
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1.22 |
1.37 |
40.8 |
-0.87 |
-0.17 |
19.8 |
77 |
5 |
4 |
2 |
9 |
1 |
0 |
0 |
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6 |
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1.46 |
1.53 |
19.5 |
-0.08 |
-0.06 |
1.9 |
76 |
0 |
0 |
2 |
4 |
1 |
3 |
0 |
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7 |
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1.46 |
1.53 |
21.7 |
-0.50 |
-0.18 |
2.6 |
82 |
0 |
0 |
5 |
3 |
1 |
1 |
0 |
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8 |
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1.46 |
1.52 |
22.8 |
-0.28 |
-0.19 |
2.8 |
80 |
1 |
0 |
4 |
4 |
1 |
2 |
0 |
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9 |
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1.46 |
1.52 |
27.2 |
-0.82 |
-0.14 |
2.6 |
86 |
0 |
0 |
5 |
3 |
1 |
1 |
0 |
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10 |
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1.33 |
1.93 |
30.0 |
-0.49 |
0.00 |
19.2 |
77 |
4 |
3 |
0 |
4 |
1 |
1 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program