PDBsum entry 2ja5 Go to PDB code:  Pore analysis for: 2ja5 calculated with MOLE 2.0 PDB id 2ja5 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 27 pores, coloured by radius 27 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.39 1.39 34.9 -1.13 -0.34 22.2 79 4 6 1 3 1 0 0   2 1.63 1.87 35.4 -1.16 -0.42 14.3 84 4 5 4 2 2 1 0   3 2.81 3.04 36.9 -1.87 -0.40 20.0 82 5 2 5 1 3 0 0   4 1.28 1.29 43.3 -1.90 -0.85 19.1 85 3 7 5 1 0 0 0   5 1.81 4.70 46.5 -3.14 -0.47 37.0 79 6 4 2 0 1 2 0  U 1 P C 5 P C 6 P DT 18 T DT 19 T DC 21 T BRU 22 T DG 23 T DG 24 T DT 25 T DA 27 T 6 1.48 2.18 48.3 -0.88 -0.36 20.7 81 2 5 0 6 0 4 0   7 2.13 2.26 69.0 -1.32 -0.36 18.9 84 5 3 2 5 0 2 0  C 5 P C 6 P A 7 P DT 18 T DT 19 T 8 1.60 2.95 81.5 -2.14 -0.37 28.2 80 12 5 5 4 3 1 0   9 4.50 4.64 83.2 -1.96 -0.49 22.2 86 12 6 10 2 1 1 0   10 1.64 2.94 86.1 -1.91 -0.43 26.2 80 11 8 6 7 2 1 0   11 1.29 1.53 88.6 -2.03 -0.55 27.1 80 12 7 6 9 0 0 1  C 5 P DT 18 T 12 2.70 2.70 90.7 -2.33 -0.59 22.7 86 10 8 11 0 2 1 0  C 5 P C 6 P A 10 P DT 18 T DT 19 T 13 2.97 4.95 93.1 -1.38 -0.35 20.2 82 11 6 5 5 2 2 0   14 1.72 3.86 97.4 -1.37 -0.20 17.8 84 10 7 9 10 5 1 0   15 1.44 1.44 96.7 -1.46 -0.39 16.4 80 10 7 8 6 3 3 0   16 2.73 2.72 100.6 -1.95 -0.50 21.2 82 9 8 6 3 3 2 0  C 5 P C 6 P A 10 P DT 18 T DT 19 T 17 2.62 2.71 114.2 -1.96 -0.37 25.3 79 9 10 7 5 4 4 0   18 1.50 2.20 114.7 -1.52 -0.42 21.8 82 9 8 7 10 2 4 0  C 5 P DT 18 T 19 1.22 2.03 122.6 -2.02 -0.47 28.2 79 18 9 6 5 3 0 1   20 1.31 2.09 125.9 -1.78 -0.39 24.9 80 17 9 8 6 4 1 1   21 1.25 2.03 141.1 -1.64 -0.44 24.2 80 17 11 7 13 1 1 1   22 2.47 3.00 143.2 -2.13 -0.53 27.8 83 14 11 9 10 0 3 0  C 5 P DT 18 T 23 1.99 2.17 164.3 -1.52 -0.31 21.7 83 16 9 11 13 2 4 0   24 1.28 1.45 168.5 -1.79 -0.46 26.0 80 17 13 4 11 3 4 1   25 1.50 1.54 196.8 -2.34 -0.53 29.8 81 25 11 9 7 2 4 0   26 1.35 2.12 198.1 -2.00 -0.41 26.1 80 17 11 9 10 2 4 1   27 1.97 3.42 216.0 -2.04 -0.39 25.9 82 23 10 13 8 4 4 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.