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PDBsum entry 2j9m
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Tunnel analysis for: 2j9m calculated with  MOLE 2.0
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PDB id
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2j9m
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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7 tunnels,
coloured by tunnel radius |
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9 tunnels,
coloured by
tunnel radius
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9 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.06 |
2.16 |
16.8 |
1.34 |
0.41 |
7.7 |
69 |
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3 |
0 |
0 |
5 |
2 |
0 |
0 |
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2 |
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1.43 |
1.49 |
18.1 |
0.55 |
-0.07 |
8.8 |
75 |
1 |
1 |
1 |
4 |
1 |
0 |
0 |
PY8 299 A
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3 |
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1.33 |
1.33 |
26.2 |
1.42 |
0.20 |
2.8 |
72 |
1 |
0 |
1 |
7 |
2 |
0 |
0 |
PY8 299 A
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4 |
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1.53 |
1.57 |
29.1 |
1.01 |
-0.04 |
5.3 |
83 |
0 |
1 |
1 |
6 |
0 |
0 |
0 |
PY8 299 A
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5 |
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1.23 |
1.23 |
30.5 |
1.07 |
0.16 |
5.2 |
73 |
2 |
1 |
1 |
9 |
2 |
0 |
0 |
PY8 299 A
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6 |
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1.61 |
1.66 |
30.6 |
-0.71 |
-0.28 |
15.8 |
81 |
3 |
2 |
1 |
6 |
2 |
0 |
0 |
PY8 299 A
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7 |
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1.51 |
1.55 |
34.9 |
-0.43 |
-0.25 |
15.0 |
83 |
3 |
3 |
1 |
6 |
1 |
0 |
0 |
PY8 299 A
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8 |
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1.17 |
2.42 |
35.6 |
1.26 |
0.38 |
8.5 |
72 |
1 |
2 |
0 |
5 |
2 |
1 |
0 |
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9 |
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1.25 |
1.31 |
49.1 |
0.60 |
0.20 |
11.4 |
85 |
4 |
2 |
2 |
13 |
1 |
1 |
0 |
PY8 299 A
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program