PDBsum entry 2j88

Hydrolase

PDB id: 2j88

Contents

Protein chains

319 a.a. *

162 a.a. *

175 a.a. *

Waters ×63

* Residue conservation analysis

PDB id:

2j88

Name:

Hydrolase

Title:

Hyaluronidase in complex with a monoclonal igg fab fragment

Structure:

Hyalurononglucosaminidase. Chain: a. Fragment: residues 33-382. Synonym: hya, allergen api m 2, api m ii, hyaluronidase. Engineered: yes. Fab. Chain: h. Fab. Chain: l

Source:

Apis mellifera. Honey bee. Organism_taxid: 7460. Expressed in: trichoplusia ni. Expression_system_taxid: 7111. Expression_system_variant: high five. Mus musculus. House mouse. Organism_taxid: 10090.

Resolution:

2.60Å R-factor: 0.212 R-free: 0.247

Authors:

S.Padavattan,T.Schirmer,Z.Markovic-Housley

Key ref:

S.Padavattan et al. (2007). Identification of a B-cell epitope of hyaluronidase, a major bee venom allergen, from its crystal structure in complex with a specific Fab. J Mol Biol, 368, 742-752. PubMed id: 17374540 DOI: 10.1016/j.jmb.2007.02.036

Date:

23-Oct-06 Release date: 03-Apr-07

Protein chain

Q08169  (HUGA_APIME) -  Hyaluronidase from Apis mellifera

Seq: 382 a.a.

Struc: 319 a.a.

Protein chain

No UniProt id for this chain

Struc: 162 a.a.

Protein chain

No UniProt id for this chain

Struc: 175 a.a.

Enzyme reactions

• Enzyme class: Chain A: E.C.3.2.1.35 - hyaluronoglucosaminidase.
• Reaction: Random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.

DOI no: 10.1016/j.jmb.2007.02.036

J Mol Biol 368:742-752 (2007)

PubMed id: 17374540

Identification of a B-cell epitope of hyaluronidase, a major bee venom allergen, from its crystal structure in complex with a specific Fab.

S.Padavattan, T.Schirmer, M.Schmidt, C.Akdis, R.Valenta, I.Mittermann, L.Soldatova, J.Slater, U.Mueller, Z.Markovic-Housley.

ABSTRACT

The major allergens of honeybee venom, hyaluronidase (Hyal) and phospholipase A2, can induce life-threatening IgE-mediated allergic reactions in humans. Although conventional immunotherapy is effective, up to 40% of patients develop allergic side effects including anaphylaxis and thus, there is a need for an improved immunotherapy. A murine monoclonal anti-Hyal IgG1 antibody (mAb 21E11), that competed for Hyal binding with IgEs from sera of bee venom allergic patients, was raised. The fragment of these IgG antibodies which bind to antigen (Fab) was produced and complexed (1:1) with Hyal. The crystal structure determination of Hyal/Fab 21E11 complex (2.6 A) enabled the identification of the Hyal-IgG interface which provides indirect information on the Hyal-IgE interaction (B-cell epitope). The epitope is composed of a linear array of nine residues (Arg138, His141-Arg148) located at the tip of a helix-turn-helix motive which protrudes away from the globular core and fits tightly into the deep surface pocket formed by the residues from the six complementarity determining regions (CDRs) of the Fab. The epitope is continuous and yet its conformation appears to be essential for Ab recognition, since the synthetic 15-mer peptide comprising the entire epitope (Arg138-Glu152) is neither recognized by mAb 21E11 nor by human IgEs. The structure of the complex provides the basis for the rational design of Hyal derivatives with reduced allergenic activity, which could be used in the development of safer allergen-specific immunotherapy.

Selected figure(s)

Figure 1.
Figure 1. Close-up stereo view of the final SigmaA-weighted 2F[o]–F[c] electron density map^60 contoured at 1.0σ. Shown is part of the Hyal/Fab interface with Hyal and Fab heavy chain colored magenta and yellow, respectively. All pictures were produced using program DINO [http://www.dino3d.org/].

Figure 3.
Figure 3. Stereo view of the polar and ionic interactions within the Hyal/Fab complex. Same color code as in Figure 1 and Figure 2. Hydrogen bonds (magenta) and salt bridges (cyan) are shown as dashed lines. Water-mediated interaction is shown in blue. For clarity, residue Arg138 of Hyal is not shown. For more details, see Table 4 and Table 5.

The above figures are reprinted by permission from Elsevier: J Mol Biol (2007, 368, 742-752) copyright 2007.