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PDBsum entry 2j79

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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 2j79 calculated with MOLE 2.0 PDB id
2j79
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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18 tunnels, coloured by tunnel radius 20 tunnels, coloured by tunnel radius 20 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 2.46 16.3 -0.62 0.75 17.8 71 2 3 0 4 4 0 0  1446 GTL A
2 2.49 13.1 -0.72 0.71 18.2 69 2 3 0 3 4 0 0  1446 GTL B
3 1.93 13.5 -1.60 0.31 10.1 78 1 1 4 2 4 0 0  
4 2.10 15.1 -0.86 0.64 18.6 67 2 3 1 3 5 0 0  1446 GTL B
5 1.84 17.2 -1.61 0.36 11.8 72 1 1 4 0 5 1 0  
6 1.27 5.3 -1.42 0.21 13.8 67 1 1 1 0 3 0 0  
7 1.26 6.3 0.16 0.60 2.0 57 0 0 0 1 2 1 0  
8 2.40 6.5 0.03 0.12 15.4 80 2 0 0 3 1 0 0  
9 2.41 6.7 -1.28 0.07 26.3 62 2 0 0 1 2 0 0  
10 2.50 9.0 -1.61 -0.13 28.2 69 2 1 0 2 3 0 0  
11 2.50 9.3 -0.79 -0.12 19.6 72 2 1 0 2 4 0 0  
12 3.03 10.0 -0.50 -0.02 17.5 72 1 1 0 1 2 0 0  
13 2.90 4.6 1.98 1.09 0.8 51 0 0 0 2 3 0 0  
14 2.20 6.6 -2.41 -0.60 36.0 88 2 2 0 2 0 0 0  
15 1.97 11.5 -1.68 -0.67 26.8 85 2 2 1 2 0 0 0  
16 1.52 12.4 -0.03 0.91 14.9 71 3 0 0 2 3 0 0  
17 2.00 6.3 -1.42 -0.52 26.2 89 2 1 0 2 0 0 0  
18 1.80 9.2 -2.76 -0.63 39.0 87 3 2 0 2 0 0 0  
19 1.31 8.8 -1.86 -0.13 26.5 65 1 2 0 2 1 0 0  
20 1.32 6.0 -0.90 0.09 2.4 67 0 0 1 1 2 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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