PDBsum entry 2j6u Go to PDB code:  Tunnel analysis for: 2j6u calculated with MOLE 2.0 PDB id 2j6u Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.12 1.12 23.5 0.31 0.23 9.8 85 2 0 0 4 1 0 0  DT 14 P DGT 1016 P DC 4 T 6OG 5 T DG 6 T 2 1.14 1.14 44.6 -0.92 -0.25 12.8 81 3 1 1 5 3 0 0  DT 12 P DC 13 P DT 14 P DGT 1016 P DC 4 T 6OG 5 T DG 6 T DA 7 T DA 8 T DT 9 T DC 10 T 3 1.14 1.15 54.1 -0.35 0.21 19.9 91 6 0 2 8 1 0 0  DG 5 P DA 6 P DG 9 P DA 10 P DT 14 P DGT 1016 P DC 4 T 6OG 5 T DG 6 T DA 7 T DA 8 T DT 9 T DC 10 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.