PDBsum entry 2j6t Go to PDB code:  Tunnel analysis for: 2j6t calculated with MOLE 2.0 PDB id 2j6t Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.21 1.21 17.7 -0.01 0.10 7.3 85 1 0 0 4 1 0 0  DTP 1000 A DT 4 T 6OG 5 T DG 6 T 2 1.59 1.59 20.0 -2.29 -0.67 24.9 92 3 0 2 0 0 0 0  DG 5 P DA 7 T DA 8 T DT 9 T 3 1.27 1.28 24.7 -0.28 -0.03 17.9 98 1 1 1 3 0 0 0  DG 9 P DA 10 P DT 11 P DA 7 T 4 2.09 2.10 25.0 0.77 0.52 14.1 94 2 0 2 5 0 0 0  DT 12 P DC 13 P DA 3 T DT 4 T 6OG 5 T DG 6 T DA 7 T 5 1.17 1.17 26.9 -0.98 -0.25 17.5 87 3 3 0 5 1 0 0  DTP 1000 A CA 1002 A DC 13 P DT 4 T 6OG 5 T DG 6 T 6 1.20 1.20 28.4 -0.14 -0.35 2.5 93 0 0 1 5 1 0 0  DTP 1000 A DC 13 P DC 2 T DA 3 T DT 4 T 6OG 5 T DG 6 T 7 1.20 1.20 29.4 -0.64 -0.11 11.4 87 3 0 1 5 1 0 0  DTP 1000 A DT 4 T 6OG 5 T DG 6 T DA 7 T 8 1.19 1.19 42.6 -0.89 -0.24 13.0 83 2 2 1 4 3 0 0  DTP 1000 A DT 12 P DC 13 P DT 4 T 6OG 5 T DG 6 T DA 8 T DT 9 T DC 10 T 9 1.19 1.19 49.8 -0.77 -0.50 11.3 88 3 1 1 4 1 0 0  DTP 1000 A DA 10 P DT 11 P DT 12 P DC 13 P DT 4 T 6OG 5 T DG 6 T DA 8 T DT 9 T DC 10 T DC 11 T DT 12 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.